CAZyme3D

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Entry ID

Information for CAZyme ID: AXI77588.1

Basic Information

GenBank IDAXI77588.1
FamilyGH3
Sequence Length800
UniProt IDA0A345SV33(100,100)Download
Average pLDDT?93.65
CAZy50 ID18359
CAZy50 RepNo, AVT38161.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2126346
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusPeterkaempfera
SpeciesPeterkaempfera bronchialis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAIHPTPHAP  AEAAETATAE  GPWRDPSLAP  AARVADLIGR  MTLEEKAAQL  YGVWVGADAD60
GDGVAPHQND  MVDPVDLDEL  TTRGLGQLTR  PFGTAPVDPG  VGAVALARAQ  RRITSANRFG120
IPALAHEECL  AGFTAWGATA  YPVPLAWGAA  WDPALVAEMA  HRIGRDMRSV  GVHQGLAPVL180
DVIRDLRWGR  VEETIGEDPY  LVATIGTAYV  RGLQSAGIVA  TLKHFAGYSA  SAGARNLAPV240
RAGVRELADV  ILPPFEAAVQ  EGGARSVMHS  YAEIDGVPAA  ADPTLLTGLL  RDTWGFTGTV300
VADYFGIGFL  ETLHRVAGDR  ADAARLALTA  GVDVELPTVR  SYGDALIGAV  RDGSVPEELV360
DRALHRVLVQ  KCELGLLDRD  WSPLPTALGG  EYDDADPEQA  RGTVDLDPPE  NRAVARLLAE420
QSCVLLANPG  GTLPLPAGAR  IAVVGPRADD  PLAMLGCYSF  PSHVGVSHPD  VPLGVAIPTL480
LEAVGAEFPD  AAVTHTPGCD  VDGDDTSGIE  AAVALAREAE  ACVAVLGDRA  GLFGRGTSGE540
GCDAADLSLP  GVQGELLDAL  LATGTPVVLV  LLTGRPYALG  RWADRLAGAV  QAFFPGEEGG600
PALAGVLSGR  VNPSGRLPVG  VPYGPGGQPW  TYLQPPLGLA  GGVSNLDPTP  LYPFGHGLSY660
TAFDWEPAEA  DRSEMATDGA  VDVELTVRNT  GDRDGAEVVQ  LYLHDPVAQT  TRPDVRLVGY720
ARVPLAAGEA  RRVRFRFHAD  LASFTGLAGR  RIVEPGELEL  RLGASTGDIR  QTLPLRLTGP780
ERTVDHHRRL  VCETSVDAAE  800

Predicted 3D structure by AlphaFold2 with pLDDT = 93.65 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(115-337)

MAIHPTPHAP  AEAAETATAE  GPWRDPSLAP  AARVADLIGR  MTLEEKAAQL  YGVWVGADAD60
GDGVAPHQND  MVDPVDLDEL  TTRGLGQLTR  PFGTAPVDPG  VGAVALARAQ  RRITSANRFG120
IPALAHEECL  AGFTAWGATA  YPVPLAWGAA  WDPALVAEMA  HRIGRDMRSV  GVHQGLAPVL180
DVIRDLRWGR  VEETIGEDPY  LVATIGTAYV  RGLQSAGIVA  TLKHFAGYSA  SAGARNLAPV240
RAGVRELADV  ILPPFEAAVQ  EGGARSVMHS  YAEIDGVPAA  ADPTLLTGLL  RDTWGFTGTV300
VADYFGIGFL  ETLHRVAGDR  ADAARLALTA  GVDVELPTVR  SYGDALIGAV  RDGSVPEELV360
DRALHRVLVQ  KCELGLLDRD  WSPLPTALGG  EYDDADPEQA  RGTVDLDPPE  NRAVARLLAE420
QSCVLLANPG  GTLPLPAGAR  IAVVGPRADD  PLAMLGCYSF  PSHVGVSHPD  VPLGVAIPTL480
LEAVGAEFPD  AAVTHTPGCD  VDGDDTSGIE  AAVALAREAE  ACVAVLGDRA  GLFGRGTSGE540
GCDAADLSLP  GVQGELLDAL  LATGTPVVLV  LLTGRPYALG  RWADRLAGAV  QAFFPGEEGG600
PALAGVLSGR  VNPSGRLPVG  VPYGPGGQPW  TYLQPPLGLA  GGVSNLDPTP  LYPFGHGLSY660
TAFDWEPAEA  DRSEMATDGA  VDVELTVRNT  GDRDGAEVVQ  LYLHDPVAQT  TRPDVRLVGY720
ARVPLAAGEA  RRVRFRFHAD  LASFTGLAGR  RIVEPGELEL  RLGASTGDIR  QTLPLRLTGP780
ERTVDHHRRL  VCETSVDAAE  800

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help