CAZyme3D

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Entry ID

Information for CAZyme ID: AXG79421.1

Basic Information

GenBank IDAXG79421.1
FamilyCBM35
Sequence Length329
UniProt IDA0A345HRU7(100,100)Download
Average pLDDT?64.63
CAZy50 ID140790
CAZy50 RepNo, QPL69617.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2282738
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces paludis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTAGNNGASK  PEDDDPFGYL  YEDGQAAAAA  QRGQAGGYGY  PGPAAQPGVP  RTSYNQVRAV60
GDRRQAAPPP  QQAPYGGQQA  QYGQQQQAYA  QAPTTAHPTI  DPRQLPGQRG  AGGGRGSGGG120
PNNRGLLIAA  VAVVAVVVIG  ITVALMNGDD  KKDGDAAPSG  GASSSAGEPT  SPSSAPSEDA180
DDDDAASGEL  PKGDAAVMKL  TSPAAMSTDI  PGAKSESGAY  ITLNGAGAAA  SWTFDVPDSG240
KYTVFVTYGV  PGKDADMTLS  INGKAIDRPL  NMKNFAHAPE  GDWEKGWTNT  YAWINLEKGS300
NTIKISCEDG  NQCEAALDQF  ALKTDWVKG329

Predicted 3D structure by AlphaFold2 with pLDDT = 64.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(217-311)

MTAGNNGASK  PEDDDPFGYL  YEDGQAAAAA  QRGQAGGYGY  PGPAAQPGVP  RTSYNQVRAV60
GDRRQAAPPP  QQAPYGGQQA  QYGQQQQAYA  QAPTTAHPTI  DPRQLPGQRG  AGGGRGSGGG120
PNNRGLLIAA  VAVVAVVVIG  ITVALMNGDD  KKDGDAAPSG  GASSSAGEPT  SPSSAPSEDA180
DDDDAASGEL  PKGDAAVMKL  TSPAAMSTDI  PGAKSESGAY  ITLNGAGAAA  SWTFDVPDSG240
KYTVFVTYGV  PGKDADMTLS  INGKAIDRPL  NMKNFAHAPE  GDWEKGWTNT  YAWINLEKGS300
NTIKISCEDG  NQCEAALDQF  ALKTDWVKG329

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help