CAZyme3D

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Entry ID

Information for CAZyme ID: AXG54798.1

Basic Information

GenBank IDAXG54798.1
FamilyGT8
Sequence Length776
UniProt IDA0A345GBN3(100,100)Download
Average pLDDT?91.52
CAZy50 ID27876
CAZy50 RepNo, QHY97741.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1915
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces lincolnensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTTTSPIPAA  TRAPATDAHA  LTGKRRIAFA  SYVDENYLPG  FLVLLKSLAL  SNPGVCEDFV60
VLYDDLRPGS  IAKIRDLHPR  IVLKRVDADH  YDAYKKGDQD  NYLVRKAYFI  LDVFRIREYD120
TIITLDTDMV  VLGDLGELLR  LREGLAAVPQ  FFYGRHKLNS  GLLVIQREYL  TDEFCAKLDR180
CGRSGDYELD  KHDQGILNAV  LDGDFLRLDA  RYNFVKRRLS  GDLPVPDDTA  ILHFTGRHKP240
WQGGESGYSQ  AEERWRSYDL  DDADFHAAYL  ACSGGLHHDL  LVHYGTPHVA  RTGDVEAARK300
VAAAHIASGD  YQDAVDILSG  VHIPLDEAWP  HEVLGHALMS  VSRYEEARTQ  LLLAAAAPNR360
AATAYARLAQ  MAWVHGDNTE  ALKYATAGMS  VDPTHRPSRL  WAQRAAAVPS  QELGAAEDQL420
AHVAFYMDRQ  GNADDKLLPE  SVRSAFGPDT  GSRRWYPVHA  HRLFDEAALQ  RVNRRRGLVI480
GGGGLFIPDT  MPNGNSAWQW  NVPDELLKRI  DVPVAVFAVG  FNAFDGQSYR  AGRFRESLRL540
LVEQSSFFGL  RNHGSIEKVR  AMLPDHLHGK  IRFQPCPTTV  TRQLVPDWQD  PAERDDTILI600
NAAYDRAGLR  FGHDYGYFLA  QMAQAVRDLG  ELAEVRCVAH  SLDDEKIAFD  LRREHGISLP660
VIPMYDFENK  EILDLYARTK  LVIGMRGHAG  MIPFGAGTPI  ISLISHPKMA  YFLRDIERPE720
WGVSVHDRHL  AARLVERSKD  LLADHAKTVA  DVHGRQRELW  RATEANAADL  RVILGG776

Predicted 3D structure by AlphaFold2 with pLDDT = 91.52 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT8(32-242)

MTTTSPIPAA  TRAPATDAHA  LTGKRRIAFA  SYVDENYLPG  FLVLLKSLAL  SNPGVCEDFV60
VLYDDLRPGS  IAKIRDLHPR  IVLKRVDADH  YDAYKKGDQD  NYLVRKAYFI  LDVFRIREYD120
TIITLDTDMV  VLGDLGELLR  LREGLAAVPQ  FFYGRHKLNS  GLLVIQREYL  TDEFCAKLDR180
CGRSGDYELD  KHDQGILNAV  LDGDFLRLDA  RYNFVKRRLS  GDLPVPDDTA  ILHFTGRHKP240
WQGGESGYSQ  AEERWRSYDL  DDADFHAAYL  ACSGGLHHDL  LVHYGTPHVA  RTGDVEAARK300
VAAAHIASGD  YQDAVDILSG  VHIPLDEAWP  HEVLGHALMS  VSRYEEARTQ  LLLAAAAPNR360
AATAYARLAQ  MAWVHGDNTE  ALKYATAGMS  VDPTHRPSRL  WAQRAAAVPS  QELGAAEDQL420
AHVAFYMDRQ  GNADDKLLPE  SVRSAFGPDT  GSRRWYPVHA  HRLFDEAALQ  RVNRRRGLVI480
GGGGLFIPDT  MPNGNSAWQW  NVPDELLKRI  DVPVAVFAVG  FNAFDGQSYR  AGRFRESLRL540
LVEQSSFFGL  RNHGSIEKVR  AMLPDHLHGK  IRFQPCPTTV  TRQLVPDWQD  PAERDDTILI600
NAAYDRAGLR  FGHDYGYFLA  QMAQAVRDLG  ELAEVRCVAH  SLDDEKIAFD  LRREHGISLP660
VIPMYDFENK  EILDLYARTK  LVIGMRGHAG  MIPFGAGTPI  ISLISHPKMA  YFLRDIERPE720
WGVSVHDRHL  AARLVERSKD  LLADHAKTVA  DVHGRQRELW  RATEANAADL  RVILGG776

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help