CAZyme3D

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Entry ID

Information for CAZyme ID: AXE35629.1

Basic Information

GenBank IDAXE35629.1
FamilyCBM5, GH18
Sequence Length529
UniProt IDA0A344UK31(100,100)Download
Average pLDDT?89.14
CAZy50 ID15257
CAZy50 RepNo, UCJ00147.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2202141
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNeisseriales
FamilyChromobacteriaceae
GenusChromobacterium
SpeciesChromobacterium phragmitis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMHFPLSRAL  LAAGAALALS  QAVWAAPSCS  PWASGKIYNA  GDYATFNGKT  WRASWWTQGE60
QPGSSQWGAW  QERPASECVP  DGGDPGTPGT  PGSGVPPEPK  PTVGRHVGSY  FTQWGIYQRN120
YKVSDLVKSG  GDKQLTFLNY  AFGNVYADGK  CGMVTRAENG  NGDGGDAWAD  YQRSFGAGES180
VDGKADSWND  PLRGNFNQLR  KLKLANPSLK  VLISLGGWTW  SKNFGKFAAT  DAGRKAMVSS240
CIDLYVKGNL  PVGENAGGQA  AALGVFDGFD  IDWEYPGGGG  LPTNTVDPND  KQNFTLLLAE300
FRNQLNALST  ANKRRYYLTV  AIGSGVDKIR  NTEPDKYSAY  LDWINVMTYD  FHGGWDAKGP360
TNFQSNLYRD  PAAPVTGDQV  YYNVDDAVKT  LVGAGMPRAK  INVGLPFYGR  GWAGVAAGPK420
GDGLYQVATG  PGKGTYEQGI  EDYRVLKGRS  AKTFTHPVTK  QFWTYDGNEF  WSYDDPATLR480
AKLDYVRQQQ  LGGVFSWSLD  GDDAQASLLK  TSAEVRQDAA  AAKRRAAKK529

Predicted 3D structure by AlphaFold2 with pLDDT = 89.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM5(31-70)+GH18(106-507)

MMHFPLSRAL  LAAGAALALS  QAVWAAPSCS  PWASGKIYNA  GDYATFNGKT  WRASWWTQGE60
QPGSSQWGAW  QERPASECVP  DGGDPGTPGT  PGSGVPPEPK  PTVGRHVGSY  FTQWGIYQRN120
YKVSDLVKSG  GDKQLTFLNY  AFGNVYADGK  CGMVTRAENG  NGDGGDAWAD  YQRSFGAGES180
VDGKADSWND  PLRGNFNQLR  KLKLANPSLK  VLISLGGWTW  SKNFGKFAAT  DAGRKAMVSS240
CIDLYVKGNL  PVGENAGGQA  AALGVFDGFD  IDWEYPGGGG  LPTNTVDPND  KQNFTLLLAE300
FRNQLNALST  ANKRRYYLTV  AIGSGVDKIR  NTEPDKYSAY  LDWINVMTYD  FHGGWDAKGP360
TNFQSNLYRD  PAAPVTGDQV  YYNVDDAVKT  LVGAGMPRAK  INVGLPFYGR  GWAGVAAGPK420
GDGLYQVATG  PGKGTYEQGI  EDYRVLKGRS  AKTFTHPVTK  QFWTYDGNEF  WSYDDPATLR480
AKLDYVRQQQ  LGGVFSWSLD  GDDAQASLLK  TSAEVRQDAA  AAKRRAAKK529

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help