CAZyme3D

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Entry ID

Information for CAZyme ID: AXB41213.1

Basic Information

GenBank IDAXB41213.1
FamilyCBM35
Sequence Length987
UniProt IDA0A344KZI9(100,100)Download
Average pLDDT?92.59
CAZy50 ID672
CAZy50 RepNo, AXV05032.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1804986
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis albispora

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLFVALLAL  VLTIGVATPA  TAQSGIPPQE  PGVTMRVFDV  QVPLEEYCTL  KPSQTPNIDK60
LMPVIDWTTT  ADFGIADRFV  TEVTGYLNVG  APGRYDFRLT  SDDGARLFLG  ETKVIDHGGR120
HGATPKDGSI  DLTAGAHALR  IDHFDADFDQ  RLKLEWKPPG  ATAFTLVPTS  ALSTDEGVTR180
VTSPGRKECE  GVTESPGDGL  PLTSVHPGYA  LTNLRPEGFE  PQVTGMDWLP  DNRLAISTWG240
GARESVRGEV  YLLDGVTGAT  DPSKVKPKKI  AEGLQEPMGI  KYVDGTLYVS  EKKGLTALVD300
TNGDEVTDEY  RTIATWPFGG  NYHEFAFGLL  YQNGYFYVST  GIAMVPGGAS  LDPQPAANRG360
STLKIDKATG  KVSYVAGGLR  TPNGLGWGPE  GDIFVTDNQG  AYLPTSKLVR  IKQGRFFNHH420
TNPDGPFDDQ  PVTQPVLWLP  HGEISNSPSN  PLVLPDGPFA  GQMVFGDVTY  GGLQRAHLEK480
VGDDYQGAVF  RMTQGLESGV  SRISLGPDGA  IYTGGIGSEG  NWGQAGKLKY  GLQKLSLSNA540
DAFDMLAMRA  IDGGFEIEYT  QPLSEATAQD  LAAKYNVSQW  RYVATPQYGG  PKVDEETLRV600
GSAALSADRK  KVTLKIDGLK  PGRVVHVHSP  RPFAAESGQE  LWSTEAWYTL  NTLPNGATAP660
PEYEAESAQL  AGGTGFNTNH  SGYSGAGFVD  RNWEPGTSTT  FAVNAARGGR  HDLALRYANG720
LNPSPNPVTK  SMSLYVNGRK  EKQVWLASTG  AWNQWATHVE  SVVLRTGANK  ISFVYEPTDS780
GHVNLDKLTV  TPTQRITLFD  GSSLDAWEAT  AGGPAKWPVA  NGSMESFGGD  IRTREKFGDF840
RMHAEWYQPQ  YPPGQTGQAR  GNSGVYIQER  YEIQVLDSFG  IEPPKTNDAG  AIYLKKAPDV900
NAATAPGTWQ  TYDIIFRAAR  YDSSGKKVAD  ARVSLWWNGK  LVHDDVAIDG  PTGAGRPEDP960
SAGHIRLQDH  GDPGENPRFR  NVWIERM987

Predicted 3D structure by AlphaFold2 with pLDDT = 92.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(663-790)

MRLFVALLAL  VLTIGVATPA  TAQSGIPPQE  PGVTMRVFDV  QVPLEEYCTL  KPSQTPNIDK60
LMPVIDWTTT  ADFGIADRFV  TEVTGYLNVG  APGRYDFRLT  SDDGARLFLG  ETKVIDHGGR120
HGATPKDGSI  DLTAGAHALR  IDHFDADFDQ  RLKLEWKPPG  ATAFTLVPTS  ALSTDEGVTR180
VTSPGRKECE  GVTESPGDGL  PLTSVHPGYA  LTNLRPEGFE  PQVTGMDWLP  DNRLAISTWG240
GARESVRGEV  YLLDGVTGAT  DPSKVKPKKI  AEGLQEPMGI  KYVDGTLYVS  EKKGLTALVD300
TNGDEVTDEY  RTIATWPFGG  NYHEFAFGLL  YQNGYFYVST  GIAMVPGGAS  LDPQPAANRG360
STLKIDKATG  KVSYVAGGLR  TPNGLGWGPE  GDIFVTDNQG  AYLPTSKLVR  IKQGRFFNHH420
TNPDGPFDDQ  PVTQPVLWLP  HGEISNSPSN  PLVLPDGPFA  GQMVFGDVTY  GGLQRAHLEK480
VGDDYQGAVF  RMTQGLESGV  SRISLGPDGA  IYTGGIGSEG  NWGQAGKLKY  GLQKLSLSNA540
DAFDMLAMRA  IDGGFEIEYT  QPLSEATAQD  LAAKYNVSQW  RYVATPQYGG  PKVDEETLRV600
GSAALSADRK  KVTLKIDGLK  PGRVVHVHSP  RPFAAESGQE  LWSTEAWYTL  NTLPNGATAP660
PEYEAESAQL  AGGTGFNTNH  SGYSGAGFVD  RNWEPGTSTT  FAVNAARGGR  HDLALRYANG720
LNPSPNPVTK  SMSLYVNGRK  EKQVWLASTG  AWNQWATHVE  SVVLRTGANK  ISFVYEPTDS780
GHVNLDKLTV  TPTQRITLFD  GSSLDAWEAT  AGGPAKWPVA  NGSMESFGGD  IRTREKFGDF840
RMHAEWYQPQ  YPPGQTGQAR  GNSGVYIQER  YEIQVLDSFG  IEPPKTNDAG  AIYLKKAPDV900
NAATAPGTWQ  TYDIIFRAAR  YDSSGKKVAD  ARVSLWWNGK  LVHDDVAIDG  PTGAGRPEDP960
SAGHIRLQDH  GDPGENPRFR  NVWIERM987

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help