CAZyme3D

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Entry ID

Information for CAZyme ID: AWW49135.1

Basic Information

GenBank IDAWW49135.1
FamilyGT17
Sequence Length281
UniProt IDA0A2Z4JQI7(100,100)Download
Average pLDDT?92.49
CAZy50 ID153417
CAZy50 RepNo, QWD60368.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2527775
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPolynucleobacter
SpeciesPolynucleobacter paneuropaeus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQEKFLDVFL  FYNELDLLKA  RLEYLGPTVD  HFIISEANID  FSGAPKEFIL  SKAVISTLPY60
SEKIIYHREE  IHLDSFEWRF  KKLKYRNRKN  KFLWKIQDAQ  RNSTLKALRP  FSPDDIILFG120
DLDEFPSRFA  LDEGPRLILN  IEKKNTLFNA  YSCDQIFFYY  NIHNASPKEK  FYGSVFTNLK180
SFRKYLPHKY  RSDKNELAHI  ANGGWHFSYF  MTEEKILAKV  HAISEVENLS  QYKALSKKSI240
QEKISAGVDL  YDRNIELCDQ  EKLKLPEAIL  QVLNKYLPYC  T281

Predicted 3D structure by AlphaFold2 with pLDDT = 92.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT17(4-276)

MQEKFLDVFL  FYNELDLLKA  RLEYLGPTVD  HFIISEANID  FSGAPKEFIL  SKAVISTLPY60
SEKIIYHREE  IHLDSFEWRF  KKLKYRNRKN  KFLWKIQDAQ  RNSTLKALRP  FSPDDIILFG120
DLDEFPSRFA  LDEGPRLILN  IEKKNTLFNA  YSCDQIFFYY  NIHNASPKEK  FYGSVFTNLK180
SFRKYLPHKY  RSDKNELAHI  ANGGWHFSYF  MTEEKILAKV  HAISEVENLS  QYKALSKKSI240
QEKISAGVDL  YDRNIELCDQ  EKLKLPEAIL  QVLNKYLPYC  T281

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help