CAZyme3D

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Entry ID

Information for CAZyme ID: AWS25363.1

Basic Information

GenBank IDAWS25363.1
FamilyCBM40, GH33
Sequence Length694
UniProt IDA0A2Z3TZA2(100,100)Download
Average pLDDT?90.85
CAZy50 ID6159
CAZy50 RepNo, ATD57534.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1502
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium perfringens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNYKGITLIL  TAAMVISGGN  YVLVKGSTLD  SGKNNSGYEI  KVNNSESLSS  LGEYKDINLE60
SSNASNITYD  LEKYKNLDEG  TIVVRFNSKD  SKIQSLLGIS  NSKTKNGYFN  FYVTNSRVGF120
ELRNQKNEGN  TQNGTENLVH  MYKDVALNEG  DNTVALKIEK  NKGYKLFLNG  KMIKEVKDTN180
TKFLNNIENL  DSAFIGKTNR  YGQSNEYNFK  GNIGFMNIYN  EPLGDDYLLS  KTGETKAKEE240
VLVEGAVKTE  PVDLFHPGFL  NSSNYRIPAL  FKTKEGTLIA  SIDARRHGGA  DAPNNDIDTA300
VRRSEDGGKT  WDEGQIIMDY  PDKSSVIDTT  LIEDDETGRI  FLLVTHFPSK  YGFWNAGLGS360
GFKNIDGKEY  LCLYDSSGKE  FTVRENVVYD  KDSNKTEYTT  NALGDLFRNG  TKIDNINSST420
APLKAKGTSY  INLVYSDDDG  KTWSEPQNIN  FQVKKDWMKF  LGIAPGRGIQ  IKNGEHKGRI480
VVPVYYTNEK  GKQSSAVIYS  DDSGKNWTIG  ESPNDNRKLE  NGKIINSKTL  SDDAPQLTEC540
QVVEMPNGQL  KLFMRNLSGY  LNIATSFDGG  ATWDETVEKD  TNVLEPYCQL  SVINYSQKVD600
GKDAVIFSNP  NARSRSNGTV  RIGLINQVGT  YENGEPKYEF  DWKYNKLVKP  GYYAYSCLTE660
LSNGNIGLLY  EGTPSEEMSY  IEMNLKYLES  GANK694

Predicted 3D structure by AlphaFold2 with pLDDT = 90.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM40(55-236)+GH33(253-681)

MNYKGITLIL  TAAMVISGGN  YVLVKGSTLD  SGKNNSGYEI  KVNNSESLSS  LGEYKDINLE60
SSNASNITYD  LEKYKNLDEG  TIVVRFNSKD  SKIQSLLGIS  NSKTKNGYFN  FYVTNSRVGF120
ELRNQKNEGN  TQNGTENLVH  MYKDVALNEG  DNTVALKIEK  NKGYKLFLNG  KMIKEVKDTN180
TKFLNNIENL  DSAFIGKTNR  YGQSNEYNFK  GNIGFMNIYN  EPLGDDYLLS  KTGETKAKEE240
VLVEGAVKTE  PVDLFHPGFL  NSSNYRIPAL  FKTKEGTLIA  SIDARRHGGA  DAPNNDIDTA300
VRRSEDGGKT  WDEGQIIMDY  PDKSSVIDTT  LIEDDETGRI  FLLVTHFPSK  YGFWNAGLGS360
GFKNIDGKEY  LCLYDSSGKE  FTVRENVVYD  KDSNKTEYTT  NALGDLFRNG  TKIDNINSST420
APLKAKGTSY  INLVYSDDDG  KTWSEPQNIN  FQVKKDWMKF  LGIAPGRGIQ  IKNGEHKGRI480
VVPVYYTNEK  GKQSSAVIYS  DDSGKNWTIG  ESPNDNRKLE  NGKIINSKTL  SDDAPQLTEC540
QVVEMPNGQL  KLFMRNLSGY  LNIATSFDGG  ATWDETVEKD  TNVLEPYCQL  SVINYSQKVD600
GKDAVIFSNP  NARSRSNGTV  RIGLINQVGT  YENGEPKYEF  DWKYNKLVKP  GYYAYSCLTE660
LSNGNIGLLY  EGTPSEEMSY  IEMNLKYLES  GANK694

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help