CAZyme3D

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Entry ID

Information for CAZyme ID: AWN32888.1

Basic Information

GenBank IDAWN32888.1
FamilyGH32
Sequence Length773
UniProt IDA0A2Z3K4W1(100,100)Download
Average pLDDT?81.11
CAZy50 ID28326
CAZy50 RepNo, WEV39984.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1218494
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLactobacillus
SpeciesLactobacillus helsingborgensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKCSKYRFIT  QITVATLLGL  SLKVLSTTNA  KAAQIDVPAV  LIQQKDFEQK  GQDPLLNGKY60
VSNGYTDGGY  TYLNPSDTSP  ERESSYHLDT  DEGWSNDLQT  IVYDNANKEW  VIYYLHTAKV120
INGDAGAQQN  WQRVTTKDFI  HFSQPAIAIK  DLKGDIGDAW  SSAWTGSIIV  NAGNIAGVPK180
GAQVAFFSGL  SNKDNQQNIW  AAWSDDNGKT  FAHPLNDKKI  ILDHYWPWTS  INRSDERDPA240
VFYWHNKLIM  YVAEGDNIGV  YQSDDGLNWS  NANGNQADSK  IDSSTFFKGL  PFEAPVECPA300
LRSMKTAGGE  TKQVLFFGAK  APQAKQTTGT  YYIVGHLDDK  GMFTPETEAK  RLDQGTDYYG360
ANFSGNYDLE  KADDSLISMG  WIGNWNYTNS  GIKANQEGFL  PNSTRIGTYS  LARKISLNDD420
LTITSVPLTT  GLEEKNVQKS  VGKVASQKPI  ANDYYSLLNL  KKQPANSKYV  LHFSTKDQSA480
YQGAVRLVLN  QGQDNNILIF  DPATGKYRLD  GVSSELSGNA  ASYYKNGYES  GMGYINDSGL540
KGSSEFTITV  YTDKNAIEIF  FENGQAATVA  RFCVNNVQDV  QIDAQDESKK  NQYEINYGQV600
GKDLIGFEEK  PAASESGGST  SSGNNVINTE  TPTVNSPVTN  KPDANKETDN  SAKKKQAQKR660
VVMHNSWVYH  SNGKKSFLKI  NAGATISTYG  VTEIKGKKYY  ILASDKYILA  TNVTGKKRQL720
RHNTFVYNQK  GQRIKRYYFK  KGKKLVTFGG  SVKLKHKAFY  IIGKNMYVKR  ANF773

Predicted 3D structure by AlphaFold2 with pLDDT = 81.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(87-420)

MKCSKYRFIT  QITVATLLGL  SLKVLSTTNA  KAAQIDVPAV  LIQQKDFEQK  GQDPLLNGKY60
VSNGYTDGGY  TYLNPSDTSP  ERESSYHLDT  DEGWSNDLQT  IVYDNANKEW  VIYYLHTAKV120
INGDAGAQQN  WQRVTTKDFI  HFSQPAIAIK  DLKGDIGDAW  SSAWTGSIIV  NAGNIAGVPK180
GAQVAFFSGL  SNKDNQQNIW  AAWSDDNGKT  FAHPLNDKKI  ILDHYWPWTS  INRSDERDPA240
VFYWHNKLIM  YVAEGDNIGV  YQSDDGLNWS  NANGNQADSK  IDSSTFFKGL  PFEAPVECPA300
LRSMKTAGGE  TKQVLFFGAK  APQAKQTTGT  YYIVGHLDDK  GMFTPETEAK  RLDQGTDYYG360
ANFSGNYDLE  KADDSLISMG  WIGNWNYTNS  GIKANQEGFL  PNSTRIGTYS  LARKISLNDD420
LTITSVPLTT  GLEEKNVQKS  VGKVASQKPI  ANDYYSLLNL  KKQPANSKYV  LHFSTKDQSA480
YQGAVRLVLN  QGQDNNILIF  DPATGKYRLD  GVSSELSGNA  ASYYKNGYES  GMGYINDSGL540
KGSSEFTITV  YTDKNAIEIF  FENGQAATVA  RFCVNNVQDV  QIDAQDESKK  NQYEINYGQV600
GKDLIGFEEK  PAASESGGST  SSGNNVINTE  TPTVNSPVTN  KPDANKETDN  SAKKKQAQKR660
VVMHNSWVYH  SNGKKSFLKI  NAGATISTYG  VTEIKGKKYY  ILASDKYILA  TNVTGKKRQL720
RHNTFVYNQK  GQRIKRYYFK  KGKKLVTFGG  SVKLKHKAFY  IIGKNMYVKR  ANF773

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help