CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AWI82873.1

Basic Information

GenBank IDAWI82873.1
FamilyGH8
Sequence Length358
UniProt IDA0A2U8HAY6(100,100)Download
Average pLDDT?91.19
CAZy50 ID119618
CAZy50 RepNo, AJD73979.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID311180
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusAlloyangia
SpeciesAlloyangia pacifica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRRDLLASL  SATGLFGALS  LPAAGLAGTS  STNLEGSLSD  VWEAWRDANM  DATGRVIDRL60
QKTSSHSEGQ  AYGMLLAAMM  GDRATFERLD  AWTRLNLAIR  QDALMAWRWL  PDAPVRVPDL120
NNASDGDLFR  AWALLRAARR  FDAPEYRTAA  EAIVLDLVRS  CIVHRPGADP  LLLPAARGFE180
TEAGVLYNPC  YAMPLAMQEL  AAEFNQPVLA  AAARGAVELA  RQLALDGVVP  DWVEVTPQAL240
GPAQGFSFDA  GYEAMRVPLY  LIWSGLGDHP  AVLRFAEAQS  RVPPGLAATR  LSRGSGEALT300
TSAEPGYRAI  AALATCSASQ  EIGSRIPPFS  PSAPYYPATL  QLFALIAQAE  ALPTCVPL358

Predicted 3D structure by AlphaFold2 with pLDDT = 91.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(41-347)

MNRRDLLASL  SATGLFGALS  LPAAGLAGTS  STNLEGSLSD  VWEAWRDANM  DATGRVIDRL60
QKTSSHSEGQ  AYGMLLAAMM  GDRATFERLD  AWTRLNLAIR  QDALMAWRWL  PDAPVRVPDL120
NNASDGDLFR  AWALLRAARR  FDAPEYRTAA  EAIVLDLVRS  CIVHRPGADP  LLLPAARGFE180
TEAGVLYNPC  YAMPLAMQEL  AAEFNQPVLA  AAARGAVELA  RQLALDGVVP  DWVEVTPQAL240
GPAQGFSFDA  GYEAMRVPLY  LIWSGLGDHP  AVLRFAEAQS  RVPPGLAATR  LSRGSGEALT300
TSAEPGYRAI  AALATCSASQ  EIGSRIPPFS  PSAPYYPATL  QLFALIAQAE  ALPTCVPL358

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help