CAZyme3D

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Entry ID

Information for CAZyme ID: AWH51444.1

Basic Information

GenBank IDAWH51444.1
FamilyPL10_1
Sequence Length382
UniProt IDA0A3S7KKQ6(100,100)Download
Average pLDDT?92.59
CAZy50 ID103714
CAZy50 RepNo, AWH51727.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2072413
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderXanthomonadales
FamilyXanthomonadaceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. SAU14A_NAIMI4_5

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRRRALPLL  LGVGMAATAA  HAAPPAATPA  IPVGSFNDGV  NHWRSGHADA  YARLDPEQYR60
EIADNLLLLQ  RRSGGWPVNQ  DPLRVLDAAA  REAARAAQDE  PGGSFDNRTT  YTQVDYLAEA120
FARSNDRRYR  DAALRGLDFI  LDQQIRSCGG  WPHSVPARTD  YHDRITFADD  VTSGVLTTLR180
QVQDAPRFAF  VDAARRARVA  AAVQRGDACL  LRLQVRQHGQ  PTLWAGQYDA  TTLQPAPGRR240
FELAALVTDE  SVGVVRYLMS  IPDPSPQTVQ  AIEGALAWFQ  ANALHGLRLQ  TVDAPAEQFA300
HHRSTVDRRL  LADPAAPLLW  GRFHDLADNS  VVLANRQGER  LQTYEQVGRE  RRTGYHWYGT360
WPQALLDRDA  PAWRARIGRP  AP382

Predicted 3D structure by AlphaFold2 with pLDDT = 92.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_1(70-364)

MIRRRALPLL  LGVGMAATAA  HAAPPAATPA  IPVGSFNDGV  NHWRSGHADA  YARLDPEQYR60
EIADNLLLLQ  RRSGGWPVNQ  DPLRVLDAAA  REAARAAQDE  PGGSFDNRTT  YTQVDYLAEA120
FARSNDRRYR  DAALRGLDFI  LDQQIRSCGG  WPHSVPARTD  YHDRITFADD  VTSGVLTTLR180
QVQDAPRFAF  VDAARRARVA  AAVQRGDACL  LRLQVRQHGQ  PTLWAGQYDA  TTLQPAPGRR240
FELAALVTDE  SVGVVRYLMS  IPDPSPQTVQ  AIEGALAWFQ  ANALHGLRLQ  TVDAPAEQFA300
HHRSTVDRRL  LADPAAPLLW  GRFHDLADNS  VVLANRQGER  LQTYEQVGRE  RRTGYHWYGT360
WPQALLDRDA  PAWRARIGRP  AP382

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help