CAZyme3D

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Entry ID

Information for CAZyme ID: AWE49565.1

Basic Information

GenBank IDAWE49565.1
FamilyGH25
Sequence Length255
UniProt IDA0A2S1IAF3(100,100)Download
Average pLDDT?88.59
CAZy50 ID22454
CAZy50 RepNo, BBE23314.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1827580
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces nigra

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARARKPSRR  RDRRTHRSRL  AAACAAVLAL  SATALAGTPA  AAAGKPRGHD  VSSHQKNVDW60
QAGRAKGARF  VYVKATESHT  YRNPYYGQQY  DGSRAAGLVR  GAYHFALPDR  SSGRAQAAFF120
VRNGGGWRPD  GWTLPPALDI  EYNPYSKKHK  CYGLRKTALV  SWIRAFSDEV  RRLTGRRPVI180
YTTAHWWNTC  TGSSRAFAGD  HARWVARYDA  PSPGTLPSGW  RAWTFWQYDN  AGSLPGDQNL240
FNGSLTQLKR  FARGR255

Predicted 3D structure by AlphaFold2 with pLDDT = 88.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH25(50-236)

MARARKPSRR  RDRRTHRSRL  AAACAAVLAL  SATALAGTPA  AAAGKPRGHD  VSSHQKNVDW60
QAGRAKGARF  VYVKATESHT  YRNPYYGQQY  DGSRAAGLVR  GAYHFALPDR  SSGRAQAAFF120
VRNGGGWRPD  GWTLPPALDI  EYNPYSKKHK  CYGLRKTALV  SWIRAFSDEV  RRLTGRRPVI180
YTTAHWWNTC  TGSSRAFAGD  HARWVARYDA  PSPGTLPSGW  RAWTFWQYDN  AGSLPGDQNL240
FNGSLTQLKR  FARGR255

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help