CAZyme3D

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Entry ID

Information for CAZyme ID: AWE49165.1

Basic Information

GenBank IDAWE49165.1
FamilyGH18
Sequence Length413
UniProt IDA0A2S1I981(100,100)Download
Average pLDDT?91.23
CAZy50 ID28136
CAZy50 RepNo, DAA01336.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1827580
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces nigra

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHFSHPPRSR  FLALVSAACA  AVLGAGLLAG  AGPATAEPAS  PAPRAAAGSK  VVGYFTEWGT60
YDRKYYVKNI  ETSGSADRLT  HINYAFGNVT  GGKCAIGDSY  AATERTYTAA  ESVDGVADTW120
DQPLRGTFNQ  LRELKKKHPG  LKVLWSFGGW  TWSTGFGEAA  RNPAAFAQSC  YDLVENSKWA180
DVFDGIDIDW  EYPNACGATC  DTSGRDAFRN  LMSAVRAKFG  SGNLVTAAIT  ADATSGGKID240
AADYAGAAQY  VDWYNPMTYD  FFGAWDATGP  TAPHSALTSY  SGIPKADFHS  SATIAKLKGL300
GVPSSKLLLG  IGFYGRGWTG  VTQSAPGGTA  TGAAPGTYEA  GIEDYKVLRS  RCPATGTVGG360
TAYAKCGDQW  WSYDTPATVG  TKMTYKDQQG  LGGTFFWELS  GDTANGELIK  AIR413

Predicted 3D structure by AlphaFold2 with pLDDT = 91.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(49-407)

MHFSHPPRSR  FLALVSAACA  AVLGAGLLAG  AGPATAEPAS  PAPRAAAGSK  VVGYFTEWGT60
YDRKYYVKNI  ETSGSADRLT  HINYAFGNVT  GGKCAIGDSY  AATERTYTAA  ESVDGVADTW120
DQPLRGTFNQ  LRELKKKHPG  LKVLWSFGGW  TWSTGFGEAA  RNPAAFAQSC  YDLVENSKWA180
DVFDGIDIDW  EYPNACGATC  DTSGRDAFRN  LMSAVRAKFG  SGNLVTAAIT  ADATSGGKID240
AADYAGAAQY  VDWYNPMTYD  FFGAWDATGP  TAPHSALTSY  SGIPKADFHS  SATIAKLKGL300
GVPSSKLLLG  IGFYGRGWTG  VTQSAPGGTA  TGAAPGTYEA  GIEDYKVLRS  RCPATGTVGG360
TAYAKCGDQW  WSYDTPATVG  TKMTYKDQQG  LGGTFFWELS  GDTANGELIK  AIR413

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help