CAZyme3D

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Entry ID

Information for CAZyme ID: AWB26479.1

Basic Information

GenBank IDAWB26479.1
FamilyGT2
Sequence Length255
UniProt IDA0A2R4WY58(100,100)Download
Average pLDDT?88.72
CAZy50 ID156774
CAZy50 RepNo, AGB17247.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1679096
KingdomArchaea
PhylumEuryarchaeota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloarculaceae
GenusHalococcoides
SpeciesHalococcoides cellulosivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSAPSADQSG  AGMAVEASVE  ATAAPSAAGE  DRYTFDDVSV  VMGTYNEEAA  VETVLTDIDR60
VTGGRANVVC  VDGSSDRTPE  IAREHGARVI  DQEPQGYGVA  VERALAAADR  PVIVTTDCDD120
TYPMEQLPAF  LEAINAGRDV  VSGDRLSGGA  TAMPAVNRWG  NHLFAAFASV  LLGERVRDTT180
TGMRAYRREV  IESIEWTENT  GLSAELLMRP  LLRDYDVAER  QIPYRDRAGE  TTLDPLRGGA240
EIAASIGRVW  VDERF255

Predicted 3D structure by AlphaFold2 with pLDDT = 88.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(39-193)

MSAPSADQSG  AGMAVEASVE  ATAAPSAAGE  DRYTFDDVSV  VMGTYNEEAA  VETVLTDIDR60
VTGGRANVVC  VDGSSDRTPE  IAREHGARVI  DQEPQGYGVA  VERALAAADR  PVIVTTDCDD120
TYPMEQLPAF  LEAINAGRDV  VSGDRLSGGA  TAMPAVNRWG  NHLFAAFASV  LLGERVRDTT180
TGMRAYRREV  IESIEWTENT  GLSAELLMRP  LLRDYDVAER  QIPYRDRAGE  TTLDPLRGGA240
EIAASIGRVW  VDERF255

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help