CAZyme3D

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Entry ID

Information for CAZyme ID: AVZ07195.1

Basic Information

GenBank IDAVZ07195.1
FamilyGH36
Sequence Length708
UniProt IDB1VC72(100,100)Download
Average pLDDT?95.77
CAZy50 ID35105
CAZy50 RepNo, BBG31251.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID562
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVSKYCRLSS  PRSDLIIKTH  PHAEIIWWGS  ALKHFSPDDC  ASLERPVANG  RLDIDTPLTL60
MAENALGLFS  SPGLEGHRNG  LDSSPVFYTV  DVEHTENTLR  LTSEDSVAGL  RLVSELVMTP120
SGILKVRHAL  TNLREGDWQI  NRFAITLPLA  ERAEEVMAFH  GRWTREFQPH  RVRLTHDAFV180
LENRRGRTSH  EHFPALIVGT  PGFSEQQGEV  WAVHLGWSGN  HRMRCEAKTD  GRRYVQAEAL240
WMPGEKALRK  NETLYTPWLY  ACHSADGLNG  MSQQYHRFLR  DEIIRFPEQK  PRPVHLNTWE300
GIYFNHNPDY  IMQMAERAAA  LGVERFIIDD  GWFKGRNDDR  AALGDWYTDE  QKYPNGLMPV360
IKHVKSLGME  FGIWVEPEMI  NPDSDLFRLH  PDWVLSMPGY  SQPTGRYQYV  LNLNIPEAFA420
YIYERFSWLL  GEHPVDYVKW  DMNRELVQAG  HEGRAAADAQ  TRQFYRLLDL  LRERFPHVEF480
ESCASGGGRI  DFEVLKRTHR  FWASDNNDAL  ERCTIQRGMS  YFFPPEVMGA  HIGHRRCHAT540
FRQHSIAFRG  LTALFGHMGL  ELDPVAADAK  ESDGYRRYAL  LYKEWRQLIH  TGVLWRVDMP600
DPSIQVQGVV  SPDQSQALFM  ISQLAMPDYT  LPGILRFPGL  AAEVRYRLRV  IDHPDLQVVG660
EGGHTMRKLP  VWMNQSLEAS  GEWLAQGGIQ  LPVLDPESAI  LIALERAV708

Predicted 3D structure by AlphaFold2 with pLDDT = 95.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH36(7-651)

MVSKYCRLSS  PRSDLIIKTH  PHAEIIWWGS  ALKHFSPDDC  ASLERPVANG  RLDIDTPLTL60
MAENALGLFS  SPGLEGHRNG  LDSSPVFYTV  DVEHTENTLR  LTSEDSVAGL  RLVSELVMTP120
SGILKVRHAL  TNLREGDWQI  NRFAITLPLA  ERAEEVMAFH  GRWTREFQPH  RVRLTHDAFV180
LENRRGRTSH  EHFPALIVGT  PGFSEQQGEV  WAVHLGWSGN  HRMRCEAKTD  GRRYVQAEAL240
WMPGEKALRK  NETLYTPWLY  ACHSADGLNG  MSQQYHRFLR  DEIIRFPEQK  PRPVHLNTWE300
GIYFNHNPDY  IMQMAERAAA  LGVERFIIDD  GWFKGRNDDR  AALGDWYTDE  QKYPNGLMPV360
IKHVKSLGME  FGIWVEPEMI  NPDSDLFRLH  PDWVLSMPGY  SQPTGRYQYV  LNLNIPEAFA420
YIYERFSWLL  GEHPVDYVKW  DMNRELVQAG  HEGRAAADAQ  TRQFYRLLDL  LRERFPHVEF480
ESCASGGGRI  DFEVLKRTHR  FWASDNNDAL  ERCTIQRGMS  YFFPPEVMGA  HIGHRRCHAT540
FRQHSIAFRG  LTALFGHMGL  ELDPVAADAK  ESDGYRRYAL  LYKEWRQLIH  TGVLWRVDMP600
DPSIQVQGVV  SPDQSQALFM  ISQLAMPDYT  LPGILRFPGL  AAEVRYRLRV  IDHPDLQVVG660
EGGHTMRKLP  VWMNQSLEAS  GEWLAQGGIQ  LPVLDPESAI  LIALERAV708

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help