CAZyme3D

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Entry ID

Information for CAZyme ID: AVV53146.1

Basic Information

GenBank IDAVV53146.1
FamilyGH171
Sequence Length412
UniProt IDA0A2R4KGW5(100,100)Download
Average pLDDT?93.21
CAZy50 ID51995
CAZy50 RepNo, QKJ98785.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID712710
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusTannerella
SpeciesTannerella serpentiformis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRYLFLSLI  LYFAVGIVAS  AQKVRVKTGI  EVLQDEHFRR  LEGKRVGLIT  NPTGVDHRLR60
STIDILHEAP  NVRLVALYGP  EHGVRGNVHA  GDTVGGTVDP  ATGLPIHSLY  GNTRKPTPDM120
LRGIDILVYD  IQDIGCRSFT  YISTMGLAME  AAAEAGIEFM  VLDRPNPLGG  ERVEGCIVED180
GYQSFVSPYP  IPYVYGLTCG  ELARLLNEER  MIGQRCRLQV  VKMKGWRRRM  SYAETGLPWV240
LPSPHIPHPE  TAHYYPATGI  LGELGTTSIG  VGYTLPFQLF  AAPWINGPQL  ARRMNTLRVP300
GVIFRPIYLK  PFYALFKGEF  IQGIQLHLID  TRHAPLSELQ  FLVMQEAAAL  YPNHSPLQEA360
DSSRLRMFDK  VCGSPEIRRR  FTQRFRWNDM  RDYWMKDVAA  FRRLSRKYYL  YK412

Predicted 3D structure by AlphaFold2 with pLDDT = 93.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(46-411)

MKRYLFLSLI  LYFAVGIVAS  AQKVRVKTGI  EVLQDEHFRR  LEGKRVGLIT  NPTGVDHRLR60
STIDILHEAP  NVRLVALYGP  EHGVRGNVHA  GDTVGGTVDP  ATGLPIHSLY  GNTRKPTPDM120
LRGIDILVYD  IQDIGCRSFT  YISTMGLAME  AAAEAGIEFM  VLDRPNPLGG  ERVEGCIVED180
GYQSFVSPYP  IPYVYGLTCG  ELARLLNEER  MIGQRCRLQV  VKMKGWRRRM  SYAETGLPWV240
LPSPHIPHPE  TAHYYPATGI  LGELGTTSIG  VGYTLPFQLF  AAPWINGPQL  ARRMNTLRVP300
GVIFRPIYLK  PFYALFKGEF  IQGIQLHLID  TRHAPLSELQ  FLVMQEAAAL  YPNHSPLQEA360
DSSRLRMFDK  VCGSPEIRRR  FTQRFRWNDM  RDYWMKDVAA  FRRLSRKYYL  YK412

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help