CAZyme3D

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Entry ID

Information for CAZyme ID: AVT37219.1

Basic Information

GenBank IDAVT37219.1
FamilyGH3
Sequence Length483
UniProt IDA0A2R4FIA9(100,100)Download
Average pLDDT?93.49
CAZy50 ID53852
CAZy50 RepNo, BCJ54538.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2071627
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusPlantactinospora
SpeciesPlantactinospora sp. BB1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPTDPGIRRL  VLGTLLAAFP  GTSPPGWALD  LLAEGLAGHT  LFGRNIDHPD  QVAATTAALR60
QARPDVLIAI  DEEGGDVTRL  AHATGSPYPG  NAALGAVHDV  GLTERVYHAI  GNDLVAVGVN120
LDLAPTVDVN  TADDNPIIGT  RAFGADPARV  ATHAAAAVTG  LQSAGVAACA  KHFPGHGATV180
ADSHLELPTV  DVPVELLRAR  DLPPFAAVID  AGSRAIMTAH  IRVPALTGDD  PATFSPAVLG240
DLLRGEYGFT  GVVLTDALEM  RGAAVAAGGV  GPGAVRALAA  GADLLCIGAQ  VDAELVELVV300
AEIVAALGDG  RLDRARVEQA  AERTAALAAW  TRAVAPVRAA  GTDLGYAAAR  RAVRVEGSLD360
GLTAPLVVQL  LAASTIAEGR  VPWGLGPHLN  GTEQLRVVAA  ETDAATLRDR  AAGRPIVLVG420
RHLHRLPGGP  ELVEALAGSH  PVTVVEMGWP  SGWRPVGVRA  FVTTYGASHA  NGRAAAEALR480
LVP483

Predicted 3D structure by AlphaFold2 with pLDDT = 93.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(65-286)

MPTDPGIRRL  VLGTLLAAFP  GTSPPGWALD  LLAEGLAGHT  LFGRNIDHPD  QVAATTAALR60
QARPDVLIAI  DEEGGDVTRL  AHATGSPYPG  NAALGAVHDV  GLTERVYHAI  GNDLVAVGVN120
LDLAPTVDVN  TADDNPIIGT  RAFGADPARV  ATHAAAAVTG  LQSAGVAACA  KHFPGHGATV180
ADSHLELPTV  DVPVELLRAR  DLPPFAAVID  AGSRAIMTAH  IRVPALTGDD  PATFSPAVLG240
DLLRGEYGFT  GVVLTDALEM  RGAAVAAGGV  GPGAVRALAA  GADLLCIGAQ  VDAELVELVV300
AEIVAALGDG  RLDRARVEQA  AERTAALAAW  TRAVAPVRAA  GTDLGYAAAR  RAVRVEGSLD360
GLTAPLVVQL  LAASTIAEGR  VPWGLGPHLN  GTEQLRVVAA  ETDAATLRDR  AAGRPIVLVG420
RHLHRLPGGP  ELVEALAGSH  PVTVVEMGWP  SGWRPVGVRA  FVTTYGASHA  NGRAAAEALR480
LVP483

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help