CAZyme3D

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Entry ID

Information for CAZyme ID: AVT19472.1

Basic Information

GenBank IDAVT19472.1
FamilyCE4
Sequence Length322
UniProt IDA0A7U6A5F2(100,100)Download
Average pLDDT?96.88
CAZy50 ID35812
CAZy50 RepNo, QXC61059.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID80867
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusParacidovorax
SpeciesParacidovorax avenae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTAPPLYDAT  LPYPRDLVGY  GRNPPHARWP  GGARIAVQFV  LNYEEGGENA  TLHGDAGSEQ60
FLSEMFNPAS  YPDRHISMEG  IYEYGSRAGV  WRLLREFERR  GLPLTVFGVA  TALQRHPEVT120
TAFAELGHDI  ACHGLKWIHY  QNVPEDVERA  HMAEAMDIIR  RLTGERPLGW  YTGRDSPNTR180
RLVADYGGFA  YDSDYYGDDL  PFWMKVKKTD  GTDATQLIVP  YTLDCNDMRF  ALPQGYSHAD240
PFFQYMKDTF  DALYAEGDPG  GDDRPKMMSI  GMHCRLLGRP  GRITALQRFL  DHVQRHEHAW300
VCRRIDIARH  WAATHPCPEV  TP322

Predicted 3D structure by AlphaFold2 with pLDDT = 96.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE4(89-187)

MTAPPLYDAT  LPYPRDLVGY  GRNPPHARWP  GGARIAVQFV  LNYEEGGENA  TLHGDAGSEQ60
FLSEMFNPAS  YPDRHISMEG  IYEYGSRAGV  WRLLREFERR  GLPLTVFGVA  TALQRHPEVT120
TAFAELGHDI  ACHGLKWIHY  QNVPEDVERA  HMAEAMDIIR  RLTGERPLGW  YTGRDSPNTR180
RLVADYGGFA  YDSDYYGDDL  PFWMKVKKTD  GTDATQLIVP  YTLDCNDMRF  ALPQGYSHAD240
PFFQYMKDTF  DALYAEGDPG  GDDRPKMMSI  GMHCRLLGRP  GRITALQRFL  DHVQRHEHAW300
VCRRIDIARH  WAATHPCPEV  TP322

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help