Information for CAZyme ID: AVG17564.1
Basic Information
| GenBank ID | AVG17564.1 |
| Family | GT2 |
| Sequence Length | 863 |
| UniProt ID | A0A2L2BDM1(100,100) |
| Average pLDDT? | 84.12 |
| CAZy50 ID | 21817 |
| CAZy50 Rep | No, AUH50815.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1108595 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Neisseriales |
| Family | Chromobacteriaceae |
| Genus | Chromobacterium |
| Species | Chromobacterium vaccinii |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKRSAAGWPE WGVRLRLLHP ADAPRFALLL LSLFIVTPSR GWAAWSDRAR QYFPQVDFSR | 60 |
| PRPGDPVRIL LQLAWLSLVK PPFARRAGRT GSWPYWLGLC RRALAAAAGW CRRVGFWLEA | 120 |
| RFPQAFDPVR LRVSVEGVAE HAWWRSAAVR AACYLAAALL GALLVTTPFD EYSQAVFTVV | 180 |
| LLLLALWVKR IPGPVPTLIL MVFSIAVSTR YIWWRATSTI NDDSWPNLIA GLILLSAELY | 240 |
| AWLVLLLGFF QSSWMLEREV VPLPADAALW PSVDVFIPIY NEPLRVLKPT VFAAMSMDWP | 300 |
| PGKLRVHILD DGTRDEIREF AKQAGVGYIV RREHKHAKAG NINHALGVTD ASFVAIFDCD | 360 |
| HIPTRSFLHN TMGGFLKDDK LALVQTPHHF FSDDPFERNL DTRGEVPNEG ELFYGRVQDG | 420 |
| NDLWNASFFC GSCAVLRREA LLSVGGIAVE TVTEDAHTSL KMHRRGYRSA YINMVQAAGL | 480 |
| ATESLSAHVG QRIRWARGMA QIFRSDNPLL GRGLTLGQRF CYLNAMMHFL YGIPRLVFLT | 540 |
| APLAFLLFHA YTIYAPALGL VLYVVPHMVF SVMSNSRMHG EFRRSFWGEV YETVLAWYIT | 600 |
| LPTTVALLFP GLGKFNVTAK GGVVEEDHVD WSITKPYLVL LALNLLGVGF GVYRAWTGPA | 660 |
| DEVGTVVVNL CWVAYNTLLL GVALAVAREL RQVRVSHRVQ SRLPVSLHLP DGKVYPCHTL | 720 |
| DYSEGGMALA LPEGLHLRLK QNAELTVSMR CGGRSHALPC RLVFSKDGRL SVRFVGLSLE | 780 |
| DEMALVQCTF GRPDAWQRTA EREHEGTPLG GAWDIWRMGG RSLWQLLLQA ALPFTVRSGR | 840 |
| WMGFWSWLGS LLPRQPHIYR DSK | 863 |
Predicted 3D structure by AlphaFold2 with pLDDT = 84.12 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT2(274-441)
| MKRSAAGWPE WGVRLRLLHP ADAPRFALLL LSLFIVTPSR GWAAWSDRAR QYFPQVDFSR | 60 |
| PRPGDPVRIL LQLAWLSLVK PPFARRAGRT GSWPYWLGLC RRALAAAAGW CRRVGFWLEA | 120 |
| RFPQAFDPVR LRVSVEGVAE HAWWRSAAVR AACYLAAALL GALLVTTPFD EYSQAVFTVV | 180 |
| LLLLALWVKR IPGPVPTLIL MVFSIAVSTR YIWWRATSTI NDDSWPNLIA GLILLSAELY | 240 |
| AWLVLLLGFF QSSWMLEREV VPLPADAALW PSVDVFIPIY NEPLRVLKPT VFAAMSMDWP | 300 |
| PGKLRVHILD DGTRDEIREF AKQAGVGYIV RREHKHAKAG NINHALGVTD ASFVAIFDCD | 360 |
| HIPTRSFLHN TMGGFLKDDK LALVQTPHHF FSDDPFERNL DTRGEVPNEG ELFYGRVQDG | 420 |
| NDLWNASFFC GSCAVLRREA LLSVGGIAVE TVTEDAHTSL KMHRRGYRSA YINMVQAAGL | 480 |
| ATESLSAHVG QRIRWARGMA QIFRSDNPLL GRGLTLGQRF CYLNAMMHFL YGIPRLVFLT | 540 |
| APLAFLLFHA YTIYAPALGL VLYVVPHMVF SVMSNSRMHG EFRRSFWGEV YETVLAWYIT | 600 |
| LPTTVALLFP GLGKFNVTAK GGVVEEDHVD WSITKPYLVL LALNLLGVGF GVYRAWTGPA | 660 |
| DEVGTVVVNL CWVAYNTLLL GVALAVAREL RQVRVSHRVQ SRLPVSLHLP DGKVYPCHTL | 720 |
| DYSEGGMALA LPEGLHLRLK QNAELTVSMR CGGRSHALPC RLVFSKDGRL SVRFVGLSLE | 780 |
| DEMALVQCTF GRPDAWQRTA EREHEGTPLG GAWDIWRMGG RSLWQLLLQA ALPFTVRSGR | 840 |
| WMGFWSWLGS LLPRQPHIYR DSK | 863 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.