CAZyme3D

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Entry ID

Information for CAZyme ID: AVF27840.1

Basic Information

GenBank IDAVF27840.1
FamilyGH126
Sequence Length356
UniProt IDA0A2L1UHD7(100,100)Download
Average pLDDT?92.51
CAZy50 ID122801
CAZy50 RepNo, AVG13267.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID147375
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus larvae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLAAAVFPII  FLCQEKENVQ  HKPGASPDDS  PLYSFVSRHL  MSDDGGVYTN  LRTDLPKQPD60
TARNHDQLSE  STGLLMEYAL  LSQKKDLFDH  QVYFLDKNLV  SSKKWVKWMV  GDEKKGPPVN120
ASIDDLRIAH  ALIQAGQKWG  NPEYKKLGMS  VAEGLIQGNA  SGPYLADYYN  WEDKKKGDKF180
TSSYLDLKAM  RLLAEEKPAD  WKKVYESSRT  LLQEAQLPSG  LYRKTYKLDS  KQWLPDGQGY240
NLIDSLLAAL  HASEDGLSVE  PTLSFLHKAW  NKDGVLYGTY  KEDGQTLTEN  ESPAVYAIAV300
RLLRLQQDPL  AEELKKRMGQ  LSVQDSNSPY  YGGFLDTNTL  ECYSFDQLQA  LLVERE356

Predicted 3D structure by AlphaFold2 with pLDDT = 92.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH126(32-352)

MLAAAVFPII  FLCQEKENVQ  HKPGASPDDS  PLYSFVSRHL  MSDDGGVYTN  LRTDLPKQPD60
TARNHDQLSE  STGLLMEYAL  LSQKKDLFDH  QVYFLDKNLV  SSKKWVKWMV  GDEKKGPPVN120
ASIDDLRIAH  ALIQAGQKWG  NPEYKKLGMS  VAEGLIQGNA  SGPYLADYYN  WEDKKKGDKF180
TSSYLDLKAM  RLLAEEKPAD  WKKVYESSRT  LLQEAQLPSG  LYRKTYKLDS  KQWLPDGQGY240
NLIDSLLAAL  HASEDGLSVE  PTLSFLHKAW  NKDGVLYGTY  KEDGQTLTEN  ESPAVYAIAV300
RLLRLQQDPL  AEELKKRMGQ  LSVQDSNSPY  YGGFLDTNTL  ECYSFDQLQA  LLVERE356

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help