CAZyme3D

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Entry ID

Information for CAZyme ID: AUZ45226.1

Basic Information

GenBank IDAUZ45226.1
FamilyGH50
Sequence Length765
UniProt IDA0A2L0RTE7(100,100)Download
Average pLDDT?90.69
CAZy50 ID23549
CAZy50 RepNo, SDT65454.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID76758
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas orientalis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRTLPALFA  LLFAAPLMAA  PAGQQTLFNF  VRPADVVKVA  TQDASLPQYN  AEQTPEGEVL60
RRITFSPAAE  PSLVLSPQTG  VWDWSQSGAM  SLRIQSAMNW  ALTLYVKVQS  ADGKTLVSRV120
DLPAGPAQTL  LVPLQANSPL  SQGMKAGPPM  PMTVDGQRVL  LAASTGEVDR  SQVVSVTLSM180
IKPDAAQSIL  LERFGVQDSE  PVMKAAYSEL  VDAYGQSTRA  RWPEKVSSDE  QLKAAAAKEQ240
QQLKGWLAER  DKSALDQYGG  WNKGPAFDAS  GFFRTEKRDG  RWYLVTPQGH  PFYSLGVNTV300
AADNSQTYVA  GREWMFAALP  KAGEPFDKYY  GSGDNRTGNG  AGEGRGFGSG  RWYDFYGANL360
QRTYGGDGFD  QKRWVTHTLD  RLQAWGFNTV  GNWSDPDLAT  ADRVPYTLPL  SIVGDYASIS420
TGTDWWGGMP  DPFDPRFAMA  TERAVAIAAR  DHRDDPWLIG  FFADNELAWA  GPGDDAKSRY480
ALAYGTLRMT  TDVPAKRAFL  KQLRDKYRNE  DGLSKAWGIH  LAGWELMEDP  GFEPPMPSPE540
HPEIEADFKY  FQKTFADAYF  KTISDSLKWH  APNQLLLGGR  YAVSTPEAVA  SCAQYCDVLS600
FNMYTLKPQD  GYDFAALRAL  DKPVLITEFN  FGSSDRGPFW  GGVTQLAREE  ERGAAYAAFL660
KQAMAEPSIV  GVHWFQYLDQ  PVTGRLLDGE  NGHFGLVGIT  DVPFQGFVES  VRKSNLAAVD720
QLGKEAEKAR  AAGASRESEG  GRSGQAGKGA  GQGAGHAGGH  SGNGH765

Predicted 3D structure by AlphaFold2 with pLDDT = 90.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(75-716)

MIRTLPALFA  LLFAAPLMAA  PAGQQTLFNF  VRPADVVKVA  TQDASLPQYN  AEQTPEGEVL60
RRITFSPAAE  PSLVLSPQTG  VWDWSQSGAM  SLRIQSAMNW  ALTLYVKVQS  ADGKTLVSRV120
DLPAGPAQTL  LVPLQANSPL  SQGMKAGPPM  PMTVDGQRVL  LAASTGEVDR  SQVVSVTLSM180
IKPDAAQSIL  LERFGVQDSE  PVMKAAYSEL  VDAYGQSTRA  RWPEKVSSDE  QLKAAAAKEQ240
QQLKGWLAER  DKSALDQYGG  WNKGPAFDAS  GFFRTEKRDG  RWYLVTPQGH  PFYSLGVNTV300
AADNSQTYVA  GREWMFAALP  KAGEPFDKYY  GSGDNRTGNG  AGEGRGFGSG  RWYDFYGANL360
QRTYGGDGFD  QKRWVTHTLD  RLQAWGFNTV  GNWSDPDLAT  ADRVPYTLPL  SIVGDYASIS420
TGTDWWGGMP  DPFDPRFAMA  TERAVAIAAR  DHRDDPWLIG  FFADNELAWA  GPGDDAKSRY480
ALAYGTLRMT  TDVPAKRAFL  KQLRDKYRNE  DGLSKAWGIH  LAGWELMEDP  GFEPPMPSPE540
HPEIEADFKY  FQKTFADAYF  KTISDSLKWH  APNQLLLGGR  YAVSTPEAVA  SCAQYCDVLS600
FNMYTLKPQD  GYDFAALRAL  DKPVLITEFN  FGSSDRGPFW  GGVTQLAREE  ERGAAYAAFL660
KQAMAEPSIV  GVHWFQYLDQ  PVTGRLLDGE  NGHFGLVGIT  DVPFQGFVES  VRKSNLAAVD720
QLGKEAEKAR  AAGASRESEG  GRSGQAGKGA  GQGAGHAGGH  SGNGH765

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help