CAZyme3D

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Entry ID

Information for CAZyme ID: AUX45326.1

Basic Information

GenBank IDAUX45326.1
FamilyGH8
Sequence Length389
UniProt IDA0A2L0F1B1(100,100)Download
Average pLDDT?95.62
CAZy50 ID87698
CAZy50 RepNo, AUX24512.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID56
KingdomBacteria
PhylumMyxococcota
Class
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDSLGYDSPG  YDELQPIAGP  QQYPNELQDV  LHKTDDEIAA  KIQERFQQLF  YGDPVNEAIY60
YEKGEDQARI  VDTFHGDVRS  EGIGLGMIIA  VQLDKREEHD  RLWRYAQASL  ERTSGPGRGY120
FESSCDTPVG  PLPCFDPFGQ  QQLAMALIFA  HNRWGSDTGD  IDYEADALEL  LEVMRYKEAQ180
NGGVVEGVTN  VFDAETKLAF  DFPHTAAAGI  TRPSIEMPAY  YELWAQATGD  TFWSEAAASA240
RAHWQRAAHP  VTGLMPERAT  FEGEPVFGSH  TFDAEAYRTS  LNMALDHIWF  GVDPWQVEEA300
NRLLSFFSAK  GIDTYGPSYL  LEGGNLEFGR  DRALIVMNGV  TGLMATNADR  AQYIEAAWAE360
TLEVGQPRYY  SGILNLLSLL  VLSGQFRVY389

Predicted 3D structure by AlphaFold2 with pLDDT = 95.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(66-381)

MDSLGYDSPG  YDELQPIAGP  QQYPNELQDV  LHKTDDEIAA  KIQERFQQLF  YGDPVNEAIY60
YEKGEDQARI  VDTFHGDVRS  EGIGLGMIIA  VQLDKREEHD  RLWRYAQASL  ERTSGPGRGY120
FESSCDTPVG  PLPCFDPFGQ  QQLAMALIFA  HNRWGSDTGD  IDYEADALEL  LEVMRYKEAQ180
NGGVVEGVTN  VFDAETKLAF  DFPHTAAAGI  TRPSIEMPAY  YELWAQATGD  TFWSEAAASA240
RAHWQRAAHP  VTGLMPERAT  FEGEPVFGSH  TFDAEAYRTS  LNMALDHIWF  GVDPWQVEEA300
NRLLSFFSAK  GIDTYGPSYL  LEGGNLEFGR  DRALIVMNGV  TGLMATNADR  AQYIEAAWAE360
TLEVGQPRYY  SGILNLLSLL  VLSGQFRVY389

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help