CAZyme3D

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Entry ID

Information for CAZyme ID: AUX40264.1

Basic Information

GenBank IDAUX40264.1
FamilyCBM48, GH13_11
Sequence Length708
UniProt IDA0A2L0ELT7(100,100)Download
Average pLDDT?94.12
CAZy50 ID5699
CAZy50 RepNo, QKT04275.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID56
KingdomBacteria
PhylumMyxococcota
Class
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIYKRKGLRP  GDPYPLGATW  DGSGTQFALY  SENAEAVELC  LVDDEGVEQR  LPVRHRTSYV60
WHVYVPEIGP  GQKYGYRVHG  PWAPERGLRF  NPRVRLLDPY  ARALASRVQW  NANSFAHCTG120
EEDGDLRMSE  NEALGAPLGV  VVDTSFDWGG  DRRPYVPFHR  SVIYEAHVRG  LTMQHPEIPE180
ELRGTYLGIA  HPAMIGYLRY  LGITAIELLP  VHAFVHEKFL  LDKGLRNYWG  YHTIGFFAPD240
VGYRAGDEIT  SEIRQFKEMV  KALHAAGIEV  ILDVVYNHTA  EGNHLGPTLS  MRGIDNPTYY300
RLVPGNERYY  FDYTGTGNTL  NVRHPQTLQL  IMDSLRYWVL  DMHVDGFRFD  LAAALARGLH360
DVEQLSSFFT  IVHQDPVLSQ  VKLIAEPWDV  GPGGYQVGNF  PVRWAEWNGR  YRDTLRDFWR420
GAGETASDLG  FRLTGSSDLY  ENTGRKPYTS  VNFITAHDGF  TLADLVSYNH  KHNDANGEGG480
CDGADDNRSW  NCGAEGPTDD  PEILRLRARQ  MRNLMASLLF  SQGTPMILHG  DERARTQEGN540
NNVYCQDSPI  SWQPWTWDEP  SRALLEFTRK  CIRIRHEHPA  LRRSTFFKGR  PIRGGKTYDI600
QWYRPDGELM  TDEDWTNPCT  QCLGVFLSGE  ALEDVDEAGD  RLVDDDFVLL  FNASPCDLSF660
RLPFDDPRPW  QLLVDTSDDD  ATEQRQGGEE  TQLISRSLKL  FIRIRRGA708

Predicted 3D structure by AlphaFold2 with pLDDT = 94.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(15-104)+GH13_11(183-536)

MIYKRKGLRP  GDPYPLGATW  DGSGTQFALY  SENAEAVELC  LVDDEGVEQR  LPVRHRTSYV60
WHVYVPEIGP  GQKYGYRVHG  PWAPERGLRF  NPRVRLLDPY  ARALASRVQW  NANSFAHCTG120
EEDGDLRMSE  NEALGAPLGV  VVDTSFDWGG  DRRPYVPFHR  SVIYEAHVRG  LTMQHPEIPE180
ELRGTYLGIA  HPAMIGYLRY  LGITAIELLP  VHAFVHEKFL  LDKGLRNYWG  YHTIGFFAPD240
VGYRAGDEIT  SEIRQFKEMV  KALHAAGIEV  ILDVVYNHTA  EGNHLGPTLS  MRGIDNPTYY300
RLVPGNERYY  FDYTGTGNTL  NVRHPQTLQL  IMDSLRYWVL  DMHVDGFRFD  LAAALARGLH360
DVEQLSSFFT  IVHQDPVLSQ  VKLIAEPWDV  GPGGYQVGNF  PVRWAEWNGR  YRDTLRDFWR420
GAGETASDLG  FRLTGSSDLY  ENTGRKPYTS  VNFITAHDGF  TLADLVSYNH  KHNDANGEGG480
CDGADDNRSW  NCGAEGPTDD  PEILRLRARQ  MRNLMASLLF  SQGTPMILHG  DERARTQEGN540
NNVYCQDSPI  SWQPWTWDEP  SRALLEFTRK  CIRIRHEHPA  LRRSTFFKGR  PIRGGKTYDI600
QWYRPDGELM  TDEDWTNPCT  QCLGVFLSGE  ALEDVDEAGD  RLVDDDFVLL  FNASPCDLSF660
RLPFDDPRPW  QLLVDTSDDD  ATEQRQGGEE  TQLISRSLKL  FIRIRRGA708

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help