CAZyme3D

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Entry ID

Information for CAZyme ID: AUX38192.1

Basic Information

GenBank IDAUX38192.1
FamilyGH114
Sequence Length320
UniProt IDA0A4V0NHX5(100,100)Download
Average pLDDT?83.58
CAZy50 ID126447
CAZy50 RepNo, AUX20087.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID56
KingdomBacteria
PhylumMyxococcota
Class
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHRSWPAVVP  WLIPILSAMH  VACGDAGADP  GGAGGAGGDA  RDGSSSSAPA  ATSSTAAGGG60
SELWIPALDT  PWHWLIDHPL  DLDDPKDMGL  VDPTGAPLDL  PPPVVYDIDW  EFTPAETVAA120
LHARGAKVIC  YVDVGAFEDY  RSDAGDFPES  VKGEPDYHWE  GSFWLDIRQI  DVLGPIMQAR180
FQTCKDKGFD  AIEPDEVDGY  ANESGFPLTY  EDQIAYNRFI  ADLAHGMGMS  VGLKGDIDQA240
EDLWPYFDWT  LNEQCFEFEE  CEVLVDTFVA  NGKAVFHVEY  DDPFSGHMTD  RSLFCEQTNA300
WNFNSMEMPL  DLDGGRWPCR  320

Predicted 3D structure by AlphaFold2 with pLDDT = 83.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH114(104-280)

MHRSWPAVVP  WLIPILSAMH  VACGDAGADP  GGAGGAGGDA  RDGSSSSAPA  ATSSTAAGGG60
SELWIPALDT  PWHWLIDHPL  DLDDPKDMGL  VDPTGAPLDL  PPPVVYDIDW  EFTPAETVAA120
LHARGAKVIC  YVDVGAFEDY  RSDAGDFPES  VKGEPDYHWE  GSFWLDIRQI  DVLGPIMQAR180
FQTCKDKGFD  AIEPDEVDGY  ANESGFPLTY  EDQIAYNRFI  ADLAHGMGMS  VGLKGDIDQA240
EDLWPYFDWT  LNEQCFEFEE  CEVLVDTFVA  NGKAVFHVEY  DDPFSGHMTD  RSLFCEQTNA300
WNFNSMEMPL  DLDGGRWPCR  320

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help