CAZyme3D

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Entry ID

Information for CAZyme ID: AUV28075.1

Basic Information

GenBank IDAUV28075.1
FamilyGH130
Sequence Length352
UniProt IDA0A2I8SC57(100,100)Download
Average pLDDT?96.13
CAZy50 ID128543
CAZy50 RepNo, QDE27955.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2077147
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii complex sp. CFNIH3

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDRHNKNPLI  TPADVTPSLP  GRKVDCVFNA  GVTECDGEIV  LLLRVAESVI  NSDPQQRVVP60
LLEKTDAGWV  QATASFDRRD  ERYDFSDPRV  IVLKSDPARV  WLTSMSHLRL  ARSRDGVNFR120
IDSQPFIIAD  TQYEEFGCED  ARITRIDDIA  YINYSAVSSL  GISTALAVTK  DFVTVEKKGL180
ILCPDNRDVC  FFPEKIAGKY  HALTRPAPCH  FGHPEIWICE  SPDMLHWGNH  RHLLGRSGDA240
WDCRKSGGGA  PVLKTDRGWL  EIYHGVDADQ  RYCLGALLLD  LNDPTQILAK  SPVPLLEPDA300
PYEREGFFGN  VVFTCGALIR  DETLHVWYGA  ADECVALATM  PLDKLWRHLG  VE352

Predicted 3D structure by AlphaFold2 with pLDDT = 96.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH130(2-348)

MDRHNKNPLI  TPADVTPSLP  GRKVDCVFNA  GVTECDGEIV  LLLRVAESVI  NSDPQQRVVP60
LLEKTDAGWV  QATASFDRRD  ERYDFSDPRV  IVLKSDPARV  WLTSMSHLRL  ARSRDGVNFR120
IDSQPFIIAD  TQYEEFGCED  ARITRIDDIA  YINYSAVSSL  GISTALAVTK  DFVTVEKKGL180
ILCPDNRDVC  FFPEKIAGKY  HALTRPAPCH  FGHPEIWICE  SPDMLHWGNH  RHLLGRSGDA240
WDCRKSGGGA  PVLKTDRGWL  EIYHGVDADQ  RYCLGALLLD  LNDPTQILAK  SPVPLLEPDA300
PYEREGFFGN  VVFTCGALIR  DETLHVWYGA  ADECVALATM  PLDKLWRHLG  VE352

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help