CAZyme3D

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Entry ID

Information for CAZyme ID: AUM72288.1

Basic Information

GenBank IDAUM72288.1
FamilyGH102
Sequence Length395
UniProt IDA0A2K9M9I7(100,100)Download
Average pLDDT?87.68
CAZy50 ID86704
CAZy50 RepNo, QZX85945.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID294
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fluorescens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNSRIKTWHK  GLALTLPLIA  LLAGCNRGEK  VEEPQTHALA  TYVSSPWEAL  PSVSDADLLA60
GFGSWRSACT  RLKADATWGP  TCAAAANVPQ  TAPDVRNFLK  QNLDVYGLRS  GDNSPNGLIT120
GYYEPVYPGS  LTQTATANIP  VYGVPDDMII  VALDSIYPEL  KGKRLRGRLE  GRVLKPYDDA180
ATIETKGVKA  PVIAWLTDPM  NLQFLQIQGS  GRIRLDDGRQ  LRIGYADQNG  HPYRPIGRWL240
VEQGELKKED  VTMGTISAWA  KANPNRIPEL  LGSNPSYVFF  NRNPDSNEGP  RGSLNVPLTA300
GYSVAVDRKV  IPLGSLLWLS  TTRPDGSPLN  RPVAAQDTGG  AIAGEVRADL  FWGTGEAAGQ360
LAGDMKQQGQ  IWMLWPKGMA  LPQVPQVANT  VTANP395

Predicted 3D structure by AlphaFold2 with pLDDT = 87.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(128-280)

MNSRIKTWHK  GLALTLPLIA  LLAGCNRGEK  VEEPQTHALA  TYVSSPWEAL  PSVSDADLLA60
GFGSWRSACT  RLKADATWGP  TCAAAANVPQ  TAPDVRNFLK  QNLDVYGLRS  GDNSPNGLIT120
GYYEPVYPGS  LTQTATANIP  VYGVPDDMII  VALDSIYPEL  KGKRLRGRLE  GRVLKPYDDA180
ATIETKGVKA  PVIAWLTDPM  NLQFLQIQGS  GRIRLDDGRQ  LRIGYADQNG  HPYRPIGRWL240
VEQGELKKED  VTMGTISAWA  KANPNRIPEL  LGSNPSYVFF  NRNPDSNEGP  RGSLNVPLTA300
GYSVAVDRKV  IPLGSLLWLS  TTRPDGSPLN  RPVAAQDTGG  AIAGEVRADL  FWGTGEAAGQ360
LAGDMKQQGQ  IWMLWPKGMA  LPQVPQVANT  VTANP395

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help