CAZyme3D

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Entry ID

Information for CAZyme ID: AUI71508.1

Basic Information

GenBank IDAUI71508.1
FamilyGH126
Sequence Length372
UniProt IDA0A2K9HGL1(100,100)Download
Average pLDDT?92.26
CAZy50 ID115376
CAZy50 RepNo, ASC09025.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1423720
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusCompanilactobacillus
SpeciesCompanilactobacillus alimentarius

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKKLQTVAM  ILIFFTLMGC  SKQDVKVTIP  SGKSDFVEKS  DYGNYSTNEK  KLKAFIENKM60
LTKKGIYTNY  RKQSYEKDVA  RGHELLSESS  GMWLQYLAYN  HKYSDFRKFY  RATKKTFDQK120
TQFSYRYTPS  TNKKFDVNAT  LDDLRIIKAL  QIYADETGNK  TFKKEAATRF  AMLAKNTMSN180
GKIASFYDVG  TKKASVEGSL  AYYDFLTLKY  FETTTKQKKM  YQKQLAVVKD  GYLGDAFPLY240
SSSYNWQSKS  YSDADLNTSE  AMETLLHLAE  IGKIKKVSLN  WLEQQVKNNT  LYNSYSVNGN300
VVSRSHSAGS  YAIAAMIFAT  QGDKKMYRQT  MKLVWKYQVK  DKKSDIYGGI  GIKHQNEAYS360
FNNLTTLLAA  RY372

Predicted 3D structure by AlphaFold2 with pLDDT = 92.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH126(52-369)

MKKKLQTVAM  ILIFFTLMGC  SKQDVKVTIP  SGKSDFVEKS  DYGNYSTNEK  KLKAFIENKM60
LTKKGIYTNY  RKQSYEKDVA  RGHELLSESS  GMWLQYLAYN  HKYSDFRKFY  RATKKTFDQK120
TQFSYRYTPS  TNKKFDVNAT  LDDLRIIKAL  QIYADETGNK  TFKKEAATRF  AMLAKNTMSN180
GKIASFYDVG  TKKASVEGSL  AYYDFLTLKY  FETTTKQKKM  YQKQLAVVKD  GYLGDAFPLY240
SSSYNWQSKS  YSDADLNTSE  AMETLLHLAE  IGKIKKVSLN  WLEQQVKNNT  LYNSYSVNGN300
VVSRSHSAGS  YAIAAMIFAT  QGDKKMYRQT  MKLVWKYQVK  DKKSDIYGGI  GIKHQNEAYS360
FNNLTTLLAA  RY372

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help