CAZyme3D

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Entry ID

Information for CAZyme ID: AUD98443.1

Basic Information

GenBank IDAUD98443.1
FamilyGH36
Sequence Length600
UniProt IDA0A133L287(100,100)Download
Average pLDDT?91.86
CAZy50 ID52335
CAZy50 RepNo, AUD94615.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1685
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium breve

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLDHFKDML  HEGQSLGATW  IMHSDGLTIE  TTCEDGPASK  GIVFDVTAAN  PGATATIVIG60
KPLGSIQRFH  MVGSRCREPL  PADWAGVTQV  SLVNSAPMGC  MVDDADRNVL  SFAYSFAQDE120
ITMRYGVDEE  HVLFVVMLQI  QRVPGHSRLL  LMDDGLPLDE  TMRLLVEWVA  DGSAPLPMAD180
KALEPVFSTW  YAYLQNVDAE  TLGRELDGMS  RLGCGSIFID  DGWQQYGSGR  GYSGCGDWVP240
DPVKFPDMRA  TVRRFQDAGV  GVVLWIAPLL  LGEKAHVFKT  LERYAPIHDD  GLGRQFHVLD300
PRRKAVRDYI  GGVCARMAKD  YGIAGLKIDF  LEQAGAYQGQ  PLENPEPGDV  TDVGEAMRLM360
LERIKTMLIE  NCGQVPVVEF  RQPYSSPVIA  PYSNIVRASD  CPADALTNRI  RTIDERLAAG420
NRVVHGDMLL  WDVNAGAETC  AAQILASFFA  VPQISVPPSA  MSNGQYESCR  FLLSLWRKHR480
NVLLNGRLQP  VSSILGYPLV  HAFDGNGTQV  SGVYAPDMII  DVDADTRTLI  ILNASTENNV540
TIRLRGDGGT  VKLTGHAYDC  TGAITMQFEE  DTDTFRENGD  ATITTIPVPT  YGILELALER600
600

Predicted 3D structure by AlphaFold2 with pLDDT = 91.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MLLDHFKDML  HEGQSLGATW  IMHSDGLTIE  TTCEDGPASK  GIVFDVTAAN  PGATATIVIG60
KPLGSIQRFH  MVGSRCREPL  PADWAGVTQV  SLVNSAPMGC  MVDDADRNVL  SFAYSFAQDE120
ITMRYGVDEE  HVLFVVMLQI  QRVPGHSRLL  LMDDGLPLDE  TMRLLVEWVA  DGSAPLPMAD180
KALEPVFSTW  YAYLQNVDAE  TLGRELDGMS  RLGCGSIFID  DGWQQYGSGR  GYSGCGDWVP240
DPVKFPDMRA  TVRRFQDAGV  GVVLWIAPLL  LGEKAHVFKT  LERYAPIHDD  GLGRQFHVLD300
PRRKAVRDYI  GGVCARMAKD  YGIAGLKIDF  LEQAGAYQGQ  PLENPEPGDV  TDVGEAMRLM360
LERIKTMLIE  NCGQVPVVEF  RQPYSSPVIA  PYSNIVRASD  CPADALTNRI  RTIDERLAAG420
NRVVHGDMLL  WDVNAGAETC  AAQILASFFA  VPQISVPPSA  MSNGQYESCR  FLLSLWRKHR480
NVLLNGRLQP  VSSILGYPLV  HAFDGNGTQV  SGVYAPDMII  DVDADTRTLI  ILNASTENNV540
TIRLRGDGGT  VKLTGHAYDC  TGAITMQFEE  DTDTFRENGD  ATITTIPVPT  YGILELALER600
600

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help