CAZyme3D

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Entry ID

Information for CAZyme ID: AUD62036.1

Basic Information

GenBank IDAUD62036.1
FamilyAA10, CBM73
Sequence Length481
UniProt IDA0A2K8ZSV2(100,100)Download
Average pLDDT?89.44
CAZy50 ID68024
CAZy50 RepNo, QSR57499.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2059264
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sp. Pdp11

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MANPTVFSPV  SKLSLLAAAV  MAANAFVSIS  AQAHGYVVAP  ESRSYACKTG  NNANCGAVQW60
EPQSVEGPSG  FPESGPEDGK  LASAGNGAFS  PLDEQSPSRW  SKTDIKAGWN  KFSWQFTANH120
VTRNWRYYLT  RQDWNQNQAL  SRASFDLAPF  CVVDGGMVQP  PKLVTHDCYV  PEGRSGYQVI180
LAVWEVGDTT  NSFYNAIDVN  LGSGPVVPGE  WLDVGDINPS  LDLKAGDKVM  TRVFDANGEQ240
PAKQTVITIN  DATQGDKQNW  PFLLASAINA  QQSQLKAGQK  NASGVIEPVY  GKNDIFTATT300
SGIERVEVGF  DLAPAPGNSL  EVTSLADDYQ  IIDGAAQVRF  DVTSNAEMLV  SAYLFSHDGT360
AAGFVSQTVN  NTSASLVLDV  VAPKAGHYHL  QVKAEPKQGD  VIQQNFDLFL  KDQAPAPEAD420
FVFPEGVKGY  VAGTTVLQPK  NGKVYQCKPF  PYSGYCMQWS  ASATGFEPGV  GASWTMAWTE480
L481

Predicted 3D structure by AlphaFold2 with pLDDT = 89.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA10(34-200)+CBM73(425-479)

MANPTVFSPV  SKLSLLAAAV  MAANAFVSIS  AQAHGYVVAP  ESRSYACKTG  NNANCGAVQW60
EPQSVEGPSG  FPESGPEDGK  LASAGNGAFS  PLDEQSPSRW  SKTDIKAGWN  KFSWQFTANH120
VTRNWRYYLT  RQDWNQNQAL  SRASFDLAPF  CVVDGGMVQP  PKLVTHDCYV  PEGRSGYQVI180
LAVWEVGDTT  NSFYNAIDVN  LGSGPVVPGE  WLDVGDINPS  LDLKAGDKVM  TRVFDANGEQ240
PAKQTVITIN  DATQGDKQNW  PFLLASAINA  QQSQLKAGQK  NASGVIEPVY  GKNDIFTATT300
SGIERVEVGF  DLAPAPGNSL  EVTSLADDYQ  IIDGAAQVRF  DVTSNAEMLV  SAYLFSHDGT360
AAGFVSQTVN  NTSASLVLDV  VAPKAGHYHL  QVKAEPKQGD  VIQQNFDLFL  KDQAPAPEAD420
FVFPEGVKGY  VAGTTVLQPK  NGKVYQCKPF  PYSGYCMQWS  ASATGFEPGV  GASWTMAWTE480
L481

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help