CAZyme3D

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Entry ID

Information for CAZyme ID: AUD44348.1

Basic Information

GenBank IDAUD44348.1
FamilyGT47
Sequence Length424
UniProt IDA0A2H4XDX1(100,100)Download
Average pLDDT?85.15
CAZy50 ID18157
CAZy50 RepNo, BAD90409.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1896331
KingdomEukaryota
PhylumChordata
ClassAmphibia
OrderAnura
FamilyPyxicephalidae
GenusAmietia
SpeciesAmietia nutti

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

LSLPIRLLPD  KDDVNIPLPK  SKSNCRLYNC  FDYSRCPLTS  SFPVYVYNSD  QYPFGNLIDP60
LIKQALEASV  RTNVYVTENA  NIACVYVVLL  GEMQESLMPK  PTDLEQQLHS  LPYWRTDGHN120
HLIINLSRKS  EIQNYLYNVS  TGRAMIAQST  FYDLQYRPGF  DIITTPLVHA  MSEPNFLEIP180
SQVPVKRKYL  FSFQGEKIES  LRSSLQEARS  FEEEIEGNAP  ADYDDRIITT  LKAVQDSKLD240
FVMVEFTCKN  QPKASLPTEW  ALCGAREDRL  ELLKQSTFAL  IITPGDSQLV  ISAGSAMRLF300
EALEVGAIPV  ILGEQIQLPY  HDMIRWNEAV  LIIPKPRITE  VHFLLRSLSD  NDLLAMRRQG360
RFLWETYFST  SDTVFNTILA  TLRTRIQIPA  APIREEPAVE  IPHRSGKAAG  TDPNMADNGD420
LDLG424

Predicted 3D structure by AlphaFold2 with pLDDT = 85.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT47(42-347)

LSLPIRLLPD  KDDVNIPLPK  SKSNCRLYNC  FDYSRCPLTS  SFPVYVYNSD  QYPFGNLIDP60
LIKQALEASV  RTNVYVTENA  NIACVYVVLL  GEMQESLMPK  PTDLEQQLHS  LPYWRTDGHN120
HLIINLSRKS  EIQNYLYNVS  TGRAMIAQST  FYDLQYRPGF  DIITTPLVHA  MSEPNFLEIP180
SQVPVKRKYL  FSFQGEKIES  LRSSLQEARS  FEEEIEGNAP  ADYDDRIITT  LKAVQDSKLD240
FVMVEFTCKN  QPKASLPTEW  ALCGAREDRL  ELLKQSTFAL  IITPGDSQLV  ISAGSAMRLF300
EALEVGAIPV  ILGEQIQLPY  HDMIRWNEAV  LIIPKPRITE  VHFLLRSLSD  NDLLAMRRQG360
RFLWETYFST  SDTVFNTILA  TLRTRIQIPA  APIREEPAVE  IPHRSGKAAG  TDPNMADNGD420
LDLG424

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help