CAZyme3D

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Entry ID

Information for CAZyme ID: AUD44247.1

Basic Information

GenBank IDAUD44247.1
FamilyGT47
Sequence Length424
UniProt IDA0A2H4XDN8(100,100)Download
Average pLDDT?84.95
CAZy50 ID18157
CAZy50 RepNo, BAD90409.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID449223
KingdomEukaryota
PhylumChordata
ClassAmphibia
OrderAnura
FamilyStrabomantidae
GenusNiceforonia
SpeciesNiceforonia brunnea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

LSLPIRLLPD  KDDVNVPLPK  SKRNCRLHNC  FDYSRCPLTS  GFPVFVYNSD  QYPFGNLIDP60
LIKQALEASV  RTNVYVTENA  NIACIYVVLL  GEMQELLMPK  PTELEQQLHS  LPYWRTDGHN120
HLIINLSRKS  ETQNYLYNVS  TGRAMIAQST  FYDSQYRPGF  DLVVSPLVHA  MSEPNFLEIP180
AQVPVKRKFL  FSFQGEKIES  LRSSLQEARS  FEEEIEGNAP  ADYDDRIITT  LKAVQDSKLD240
FVMVEFTCKN  QPKASLPTEW  ALCGGREDRI  ELLKQSTFAL  IITPGDSQLV  ISAGSAMRLF300
EALEAGAIPV  ILGEQIHLPY  HDMIRWNEAV  LIIPKPRITE  VHFLLRSISD  NDLLAMRRQG360
RFLWETYFST  SDTVFNTILA  TIRTRIQIPA  APIREEPAVE  IPHRSGKAAG  TDPNMADNGD420
LDLG424

Predicted 3D structure by AlphaFold2 with pLDDT = 84.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT47(57-348)

LSLPIRLLPD  KDDVNVPLPK  SKRNCRLHNC  FDYSRCPLTS  GFPVFVYNSD  QYPFGNLIDP60
LIKQALEASV  RTNVYVTENA  NIACIYVVLL  GEMQELLMPK  PTELEQQLHS  LPYWRTDGHN120
HLIINLSRKS  ETQNYLYNVS  TGRAMIAQST  FYDSQYRPGF  DLVVSPLVHA  MSEPNFLEIP180
AQVPVKRKFL  FSFQGEKIES  LRSSLQEARS  FEEEIEGNAP  ADYDDRIITT  LKAVQDSKLD240
FVMVEFTCKN  QPKASLPTEW  ALCGGREDRI  ELLKQSTFAL  IITPGDSQLV  ISAGSAMRLF300
EALEAGAIPV  ILGEQIHLPY  HDMIRWNEAV  LIIPKPRITE  VHFLLRSISD  NDLLAMRRQG360
RFLWETYFST  SDTVFNTILA  TIRTRIQIPA  APIREEPAVE  IPHRSGKAAG  TDPNMADNGD420
LDLG424

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help