CAZyme3D

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Entry ID

Information for CAZyme ID: AUD11978.1

Basic Information

GenBank IDAUD11978.1
FamilyGT44
Sequence Length266
UniProt IDA0A2H4WVV0(100,100)Download
Average pLDDT?81.61
CAZy50 ID213
CAZy50 RepNo, AAP05301.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID813
KingdomBacteria
PhylumChlamydiota
ClassChlamydiia
OrderChlamydiales
FamilyChlamydiaceae
GenusChlamydia
SpeciesChlamydia trachomatis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

SMKQARNVYN  YEQEMFLRWN  YAAATDQIRM  YMLEELGGLY  TDLDMMPSYS  QEVLELIKKH60
SDGNRMFEDM  SSRRAISDAV  LKMAVGKATT  VSMEEVAKDI  DVSRLTEEDK  TKLNALFKDL120
EPFAKPDSKG  AEAEGGEGAK  GMKKSFFQPI  DLNIVRNTMP  ILRRYHHYPE  LGWFIRGLNG180
LMVSHKGSTA  VSAVIVGQQA  AYQELAALRQ  DVLSGEFFHS  LENLTHRNHK  ERIGNHLVAN240
YLAKSLFFDY  CQDSVMPEAV  STLGIR266

Predicted 3D structure by AlphaFold2 with pLDDT = 81.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT44(1-57)

SMKQARNVYN  YEQEMFLRWN  YAAATDQIRM  YMLEELGGLY  TDLDMMPSYS  QEVLELIKKH60
SDGNRMFEDM  SSRRAISDAV  LKMAVGKATT  VSMEEVAKDI  DVSRLTEEDK  TKLNALFKDL120
EPFAKPDSKG  AEAEGGEGAK  GMKKSFFQPI  DLNIVRNTMP  ILRRYHHYPE  LGWFIRGLNG180
LMVSHKGSTA  VSAVIVGQQA  AYQELAALRQ  DVLSGEFFHS  LENLTHRNHK  ERIGNHLVAN240
YLAKSLFFDY  CQDSVMPEAV  STLGIR266

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help