CAZyme3D

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Entry ID

Information for CAZyme ID: ATR84443.1

Basic Information

GenBank IDATR84443.1
FamilyGH50
Sequence Length732
UniProt IDA0A2D2MAF0(100,100)Download
Average pLDDT?93.41
CAZy50 ID25089
CAZy50 RepNo, BBP81741.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2049589
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. HLS-6

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLHRTLPAVF  ALLFAQPLLA  GQQTLFSFVR  PTAVVQVATE  DASLPQYNAE  QTAEGEVLRR60
VVFNPVQRPS  LRLSPQTGAW  DWSNASAMTL  RLQSAMDWAL  TLDVTLQSSD  GKTLTSRIDL120
PAGPAQTVWV  PLKASSPLSQ  GMRAGPPMPW  VHEGQRVLLT  SSAGELDLSQ  VVSVTLSMTK180
PNVAQSVLIE  RFGTQDDDQL  QKAAYTGIID  GYGQFSRGRW  PEKVTSDEQL  RSAAAKEQQQ240
LKGWLAERAK  LPLDTFGGWK  GGLSFEAKGF  FRTEKRDGRW  YLVTPEGHPF  YSLGVNTVAA300
DGGRTYVEGR  EAMFTSLPQG  QERLASLYGE  GNNHDGNGSS  RGRAYNQGRW  FDFYAANLER360
SYGQPCADAS  HCPAVSLDAK  RWQSHALDRL  QAWGFNTLGN  WSDPALGQLG  RVPYTLPLAI420
VGDYSSISTG  MDWWGAMPDP  FDPRFAMATE  RAVAIAARDH  RDDPWLIGYF  ADNELAWAAP480
GDDPKARYAL  AFGTLRQTTD  VAAKRAFLKQ  LRDKYRNQEG  LSKAWGIQLT  AWELMEDPGF540
EAPLPNPEHP  EIEADYQYFQ  KVFAQTYFKT  IDDALNWHAP  NHLLLGGRYA  VSSPEAVAAC600
AEYCDVISFN  FYTPTPQDGY  DFTQLKALDK  PVLVSEFQFG  SRDRGPFWPG  PMEVAREEDR660
GPAYANFLKA  ALAEPMIVGA  HWFQYMDQPA  SGRLLDGENG  HFGLVGITDV  PFQGFIGAIR720
KANLQAQEQL  AK732

Predicted 3D structure by AlphaFold2 with pLDDT = 93.41 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(75-726)

MLHRTLPAVF  ALLFAQPLLA  GQQTLFSFVR  PTAVVQVATE  DASLPQYNAE  QTAEGEVLRR60
VVFNPVQRPS  LRLSPQTGAW  DWSNASAMTL  RLQSAMDWAL  TLDVTLQSSD  GKTLTSRIDL120
PAGPAQTVWV  PLKASSPLSQ  GMRAGPPMPW  VHEGQRVLLT  SSAGELDLSQ  VVSVTLSMTK180
PNVAQSVLIE  RFGTQDDDQL  QKAAYTGIID  GYGQFSRGRW  PEKVTSDEQL  RSAAAKEQQQ240
LKGWLAERAK  LPLDTFGGWK  GGLSFEAKGF  FRTEKRDGRW  YLVTPEGHPF  YSLGVNTVAA300
DGGRTYVEGR  EAMFTSLPQG  QERLASLYGE  GNNHDGNGSS  RGRAYNQGRW  FDFYAANLER360
SYGQPCADAS  HCPAVSLDAK  RWQSHALDRL  QAWGFNTLGN  WSDPALGQLG  RVPYTLPLAI420
VGDYSSISTG  MDWWGAMPDP  FDPRFAMATE  RAVAIAARDH  RDDPWLIGYF  ADNELAWAAP480
GDDPKARYAL  AFGTLRQTTD  VAAKRAFLKQ  LRDKYRNQEG  LSKAWGIQLT  AWELMEDPGF540
EAPLPNPEHP  EIEADYQYFQ  KVFAQTYFKT  IDDALNWHAP  NHLLLGGRYA  VSSPEAVAAC600
AEYCDVISFN  FYTPTPQDGY  DFTQLKALDK  PVLVSEFQFG  SRDRGPFWPG  PMEVAREEDR660
GPAYANFLKA  ALAEPMIVGA  HWFQYMDQPA  SGRLLDGENG  HFGLVGITDV  PFQGFIGAIR720
KANLQAQEQL  AK732

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help