CAZyme3D

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Entry ID

Information for CAZyme ID: ATP59059.1

Basic Information

GenBank IDATP59059.1
FamilyGH116
Sequence Length906
UniProt IDA0A2D1UBV9(100,100)Download
Average pLDDT?93.60
CAZy50 ID16909
CAZy50 RepNo, QRY59897.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID363852
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter ginsengisoli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHKKPSNRRD  FIKKAGLFTA  SLAAVQFPVW  GKSIFALDYP  LHNIPENKGI  DPQWIKTLYN60
RGEETTYFKS  KNEFKYIGMP  VGGLHAGTVY  VGGDGRLWLW  QIYNETFEGA  QEGIEPKTVN120
WNDGVEVRKI  RARDGSAYIE  PAIANNKRVL  EQGFAVKAVV  NGKTFIKELS  EEHWDEIVFK180
PAYPMATIKY  SSKDFPVAVY  LEVYSPFIPL  DAQNSALPAT  ILRVEVKNTS  NSSINVSVLG240
WMENGANKLT  GKVKTGKRKN  EVLAVENSSS  IFSSFEAVSD  DVKNAQDSGT  MCFTLHKTKG300
KTYTALDPWP  VKSKHFGAAA  TSSSTADAPE  KLVGGIEIAE  TVSPGKSFKA  DYSISWHFNN360
ANVNLKKIVK  DAQEGFHYAT  RFKDAGAVSA  YLQSNFEKLT  KTTELWSTTW  NDSTLPYWFL420
ERTFINIDTL  ATANTYRFAD  GRFWSWEGVG  ACAGTCTHVW  QYAQAVARIF  PELERDLRHR480
VDLGVGFKED  SGAIIFRAEN  ESRPAIDGQA  GTVLRFYREH  QMSGDNTFLQ  TNWPKIKKAV540
QFMLDQDKNG  DGMTDTPMEN  TLDAVWEGEI  AWIVGLCIAA  ARAGQAMAEE  MNDATFAQTC600
QTYVANGRKN  MEQELFNGEY  FIHRPDKVQG  RKNLGSYNTC  HIDQVYGQSW  AFQVGLPRVL660
SKDKAIAALK  ALWKYNFTAD  VGPYIKTHVG  GRPYALPGEG  GMVMNTNPHN  EPKPFGENVS720
WQLGYFHECM  SGFEHQVAAH  LMAEGMVEES  LILTRFIHDR  YHAAKRNPFN  EIECSDHYAR780
AMASYGTFIN  ACGFEYHGPK  GYIKFSPAWN  SENFKAPFTS  ANGWGSYTQK  KAGAKQLHTI840
NLKYGELQLQ  ELAFNKIGAG  AVKSVSVMLG  TQSIPVQLKQ  NGTELRITSN  KKINVKTNES900
LNITFS906

Predicted 3D structure by AlphaFold2 with pLDDT = 93.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH116(502-785)

MHKKPSNRRD  FIKKAGLFTA  SLAAVQFPVW  GKSIFALDYP  LHNIPENKGI  DPQWIKTLYN60
RGEETTYFKS  KNEFKYIGMP  VGGLHAGTVY  VGGDGRLWLW  QIYNETFEGA  QEGIEPKTVN120
WNDGVEVRKI  RARDGSAYIE  PAIANNKRVL  EQGFAVKAVV  NGKTFIKELS  EEHWDEIVFK180
PAYPMATIKY  SSKDFPVAVY  LEVYSPFIPL  DAQNSALPAT  ILRVEVKNTS  NSSINVSVLG240
WMENGANKLT  GKVKTGKRKN  EVLAVENSSS  IFSSFEAVSD  DVKNAQDSGT  MCFTLHKTKG300
KTYTALDPWP  VKSKHFGAAA  TSSSTADAPE  KLVGGIEIAE  TVSPGKSFKA  DYSISWHFNN360
ANVNLKKIVK  DAQEGFHYAT  RFKDAGAVSA  YLQSNFEKLT  KTTELWSTTW  NDSTLPYWFL420
ERTFINIDTL  ATANTYRFAD  GRFWSWEGVG  ACAGTCTHVW  QYAQAVARIF  PELERDLRHR480
VDLGVGFKED  SGAIIFRAEN  ESRPAIDGQA  GTVLRFYREH  QMSGDNTFLQ  TNWPKIKKAV540
QFMLDQDKNG  DGMTDTPMEN  TLDAVWEGEI  AWIVGLCIAA  ARAGQAMAEE  MNDATFAQTC600
QTYVANGRKN  MEQELFNGEY  FIHRPDKVQG  RKNLGSYNTC  HIDQVYGQSW  AFQVGLPRVL660
SKDKAIAALK  ALWKYNFTAD  VGPYIKTHVG  GRPYALPGEG  GMVMNTNPHN  EPKPFGENVS720
WQLGYFHECM  SGFEHQVAAH  LMAEGMVEES  LILTRFIHDR  YHAAKRNPFN  EIECSDHYAR780
AMASYGTFIN  ACGFEYHGPK  GYIKFSPAWN  SENFKAPFTS  ANGWGSYTQK  KAGAKQLHTI840
NLKYGELQLQ  ELAFNKIGAG  AVKSVSVMLG  TQSIPVQLKQ  NGTELRITSN  KKINVKTNES900
LNITFS906

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help