CAZyme3D

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Entry ID

Information for CAZyme ID: ATP10688.1

Basic Information

GenBank IDATP10688.1
FamilyGT104
Sequence Length395
UniProt IDA0A2D1QJW3(100,100)Download
Average pLDDT?94.06
CAZy50 ID90643
CAZy50 RepNo, ATL98929.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1324960
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAeromonadales
FamilyAeromonadaceae
GenusAeromonas
SpeciesAeromonas salmonicida

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTTSSPLKLP  PFDWDIFCCV  VDNFGDIGVT  WRLARQLKQQ  DQGSVRLWVD  DLASFARICP60
GLDPALDGQW  QQGIYIQHWH  DALPADVIPA  KVVIEAFACE  LPASFTQRMT  QQQPTPCWIN120
LEYLSAEPWV  EDCHGLASPQ  RVGDLSLKKY  FFFPGFTPST  GGLLCEQGLI  AACEQWQQDE180
IGLAAYWASL  GLPPKGDNEL  RVSLFTYESE  ALVSLIEGWC  QSPTPVTLLL  PLGRSLNDVL240
RGAGLASAIA  TAKAGDLLHA  GSLTIKLLPM  TDQAGYDRLL  WSCDLNLVRG  EDSFVRAQWA300
ARPFLWHIYP  QEEQAHMVKL  DGFLDHYLAD  FPPEAAQWLR  AFNHALNLGE  DTSKLWAQWP360
RYSAIWQQDA  RSWSQKLLED  GDLVTRLVKF  LESRI395

Predicted 3D structure by AlphaFold2 with pLDDT = 94.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT104(14-393)

MTTSSPLKLP  PFDWDIFCCV  VDNFGDIGVT  WRLARQLKQQ  DQGSVRLWVD  DLASFARICP60
GLDPALDGQW  QQGIYIQHWH  DALPADVIPA  KVVIEAFACE  LPASFTQRMT  QQQPTPCWIN120
LEYLSAEPWV  EDCHGLASPQ  RVGDLSLKKY  FFFPGFTPST  GGLLCEQGLI  AACEQWQQDE180
IGLAAYWASL  GLPPKGDNEL  RVSLFTYESE  ALVSLIEGWC  QSPTPVTLLL  PLGRSLNDVL240
RGAGLASAIA  TAKAGDLLHA  GSLTIKLLPM  TDQAGYDRLL  WSCDLNLVRG  EDSFVRAQWA300
ARPFLWHIYP  QEEQAHMVKL  DGFLDHYLAD  FPPEAAQWLR  AFNHALNLGE  DTSKLWAQWP360
RYSAIWQQDA  RSWSQKLLED  GDLVTRLVKF  LESRI395

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help