CAZyme3D

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Entry ID

Information for CAZyme ID: ATO61056.2

Basic Information

GenBank IDATO61056.2
FamilyGT89
Sequence Length645
UniProt IDA0A808C185(100,100)Download
Average pLDDT?89.54
CAZy50 ID38741
CAZy50 RepNo, AEV72545.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID439334
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium avium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGSRPVMRRP  GWPVFPYTTM  VRSSLWIGVA  VVAVLFAWGG  WQRRWIADDG  LIVLRTVRNL60
LAGNGPVFNQ  GERVEANTST  AWTYLMYAGS  WVGGPLRMEY  VALALALTLS  VLGVALLMLG120
AARLYAPSLR  GRRAIMLPAG  ALVYIALPPS  RDFATSGLES  GLALAYLGLL  WWMMVCWAQP180
VRNRPDRREF  AGALAFVAGF  SVLVRPELAL  MGGLALIMML  VAARTWRRRA  LIVAAGGALP240
VAYEIFRMGY  YGLLVPGTAL  AKDAAGDKWS  QGMTYLSNFD  APYLVWVPAA  LLVLLGVLLA300
AARRRPSFLR  PPLAPNYGRV  ARAVHSPPAV  VAWVLVSGLL  QALYWIRQGG  DFMHARVLLA360
PLFCLLAPVA  VVPVMVPDGQ  DYSRETGNWV  AGAACALWLG  IAGWALWAAN  SPGMGDDATH420
VTYSGIVDER  RFYAQATGHA  HPLTAADYLG  YPRMAAILTA  LNNTPEGALL  LPSGNYTQWD480
LVPMAQPPPG  TTPDKFPQKP  QHTVFFTNLG  MVGMNVGLDV  RVIDQIGLAN  PLAQHTERLK540
HGRIGHDKNL  FPDWVIADGP  WVKVYPGIPG  YLDAQWVAEA  VSALQCPDTR  AVLASVRAPM600
TPHRFLSNVL  HSFQFTGYRI  DRVPRYELAR  CGLPVPEEAP  PPPRE645

Predicted 3D structure by AlphaFold2 with pLDDT = 89.54 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT89(24-634)

MGSRPVMRRP  GWPVFPYTTM  VRSSLWIGVA  VVAVLFAWGG  WQRRWIADDG  LIVLRTVRNL60
LAGNGPVFNQ  GERVEANTST  AWTYLMYAGS  WVGGPLRMEY  VALALALTLS  VLGVALLMLG120
AARLYAPSLR  GRRAIMLPAG  ALVYIALPPS  RDFATSGLES  GLALAYLGLL  WWMMVCWAQP180
VRNRPDRREF  AGALAFVAGF  SVLVRPELAL  MGGLALIMML  VAARTWRRRA  LIVAAGGALP240
VAYEIFRMGY  YGLLVPGTAL  AKDAAGDKWS  QGMTYLSNFD  APYLVWVPAA  LLVLLGVLLA300
AARRRPSFLR  PPLAPNYGRV  ARAVHSPPAV  VAWVLVSGLL  QALYWIRQGG  DFMHARVLLA360
PLFCLLAPVA  VVPVMVPDGQ  DYSRETGNWV  AGAACALWLG  IAGWALWAAN  SPGMGDDATH420
VTYSGIVDER  RFYAQATGHA  HPLTAADYLG  YPRMAAILTA  LNNTPEGALL  LPSGNYTQWD480
LVPMAQPPPG  TTPDKFPQKP  QHTVFFTNLG  MVGMNVGLDV  RVIDQIGLAN  PLAQHTERLK540
HGRIGHDKNL  FPDWVIADGP  WVKVYPGIPG  YLDAQWVAEA  VSALQCPDTR  AVLASVRAPM600
TPHRFLSNVL  HSFQFTGYRI  DRVPRYELAR  CGLPVPEEAP  PPPRE645

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help