CAZyme3D

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Entry ID

Information for CAZyme ID: ATF71534.1

Basic Information

GenBank IDATF71534.1
FamilyGH29
Sequence Length452
UniProt IDA0A291DKH8(100,100)Download
Average pLDDT?93.21
CAZy50 ID78920
CAZy50 RepNo, QCI86178.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2060307
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyEnterococcaceae
GenusEnterococcus
SpeciesEnterococcus sp. FDAARGOS_375

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKIRGDIEE  AKEREQAAWV  PETEMLKQRL  EWFQDLKFGV  IFHYGLYAEA  GIVESWQLSE60
KDEWARENQP  YRETIEALRL  DYWQLINQFE  PKKLDTRKWA  KICKDAGFKY  CLFTTKHHDG120
FSMFNTMESE  FKIGGKLSPF  KRDILQEVFT  AFREAGIATG  AYYSKADWYS  PFYWLDDDTV180
KGRHASYDTH  LHPEIWARYV  SSVHRQIAEI  TSNYGKVDFL  WLDAGWCGQG  KEDLQMDRLA240
EIAREKQPEL  IIVDRMMGGR  HENYVTPERK  IPALAEIPKK  VWESNIPIGN  DWGYVPNDTF300
KSSQELLETL  IEVVSKGGNL  ILGVGPTPEG  EFTFEETQRL  EEIGHWLALY  GEGIYETRAR360
PTAWPNEWHL  TYQKDGKAHF  AFRSIAAVVC  EQIPLTEIDA  TEEDELIDLA  TKKPLPIYKN420
ADEPYLLWSD  ISHPNVGAVG  IRVSTHRGKN  TH452

Predicted 3D structure by AlphaFold2 with pLDDT = 93.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH29(11-356)

MTKIRGDIEE  AKEREQAAWV  PETEMLKQRL  EWFQDLKFGV  IFHYGLYAEA  GIVESWQLSE60
KDEWARENQP  YRETIEALRL  DYWQLINQFE  PKKLDTRKWA  KICKDAGFKY  CLFTTKHHDG120
FSMFNTMESE  FKIGGKLSPF  KRDILQEVFT  AFREAGIATG  AYYSKADWYS  PFYWLDDDTV180
KGRHASYDTH  LHPEIWARYV  SSVHRQIAEI  TSNYGKVDFL  WLDAGWCGQG  KEDLQMDRLA240
EIAREKQPEL  IIVDRMMGGR  HENYVTPERK  IPALAEIPKK  VWESNIPIGN  DWGYVPNDTF300
KSSQELLETL  IEVVSKGGNL  ILGVGPTPEG  EFTFEETQRL  EEIGHWLALY  GEGIYETRAR360
PTAWPNEWHL  TYQKDGKAHF  AFRSIAAVVC  EQIPLTEIDA  TEEDELIDLA  TKKPLPIYKN420
ADEPYLLWSD  ISHPNVGAVG  IRVSTHRGKN  TH452

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help