CAZyme3D

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Entry ID

Information for CAZyme ID: ATE54282.1

Basic Information

GenBank IDATE54282.1
FamilyCBM2, CBM46, GH5_4
Sequence Length689
UniProt IDA0A290Z5M2(100,100)Download
Average pLDDT?91.05
CAZy50 ID36076
CAZy50 RepNo, UZN03284.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID42197
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusActinosynnema
SpeciesActinosynnema pretiosum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLTAVATLVG  ASFSAPRPAS  AEATATADAA  GCKVDYTVTS  QWQNGFSGDV  RITNLGDAVN60
GWTLTWAFPN  GQAVSQAWNA  NVTSSGATAT  ATNVSYNAAI  PTNGSVQFGF  TGSWSGTNGV120
PTSFTLNGTA  CTGGVAPTTT  TTPVTTTTPV  TTTTPNQPPG  DAMATVAAMQ  PGWNLGNSLD180
ATGADETSWG  NPRITEALLD  NVRSQGFNSI  RIPVTWGQHQ  GSGPSYTIEP  AYLSRVKEVV240
GWALADGFYV  LLNVHHDSWQ  WINTMPSDRT  NVLARYNATW  TQLASAFKDS  SSKLLLESVN300
EPQFTGSSGD  AQNAQLLGEL  NTSFHRIVRA  SGGGNATRLL  VLPTLHTSAD  QARIDELNTT360
LTALNDRNIA  ATVHYYGYWP  FSVNVAGGTR  FDATAQKDLT  DYLDRAYNSF  VARGIPVILG420
EYGLLGFDRH  TGTIEQGEKL  KFFELFGHYA  KQRKITTMLW  DNGQHLGRTS  FQWSDPELIA480
QIKSSWTTRS  GTASTDQVFS  AKASAITAKT  IALNLNGTTF  SGLRNGSAEL  VRGTDYTVSG540
DQLTLSAALI  TRLSGARAYG  VNATLSARFS  AGVPWRIDLI  TYDTPVLQNA  TGATSAFSIP600
TNFRGDRLAT  MEAKYADGSN  AGPQNWTSFK  EYDHTFAPDY  AAGATLLKPE  LFAEVNAGQR660
VTLTFHYWSG  ATLTYYVTKN  GTSVTGTTS689

Predicted 3D structure by AlphaFold2 with pLDDT = 91.05 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM2(32-131)+GH5_4(186-464)+CBM46(493-578)+CBM46(641-677)

MLTAVATLVG  ASFSAPRPAS  AEATATADAA  GCKVDYTVTS  QWQNGFSGDV  RITNLGDAVN60
GWTLTWAFPN  GQAVSQAWNA  NVTSSGATAT  ATNVSYNAAI  PTNGSVQFGF  TGSWSGTNGV120
PTSFTLNGTA  CTGGVAPTTT  TTPVTTTTPV  TTTTPNQPPG  DAMATVAAMQ  PGWNLGNSLD180
ATGADETSWG  NPRITEALLD  NVRSQGFNSI  RIPVTWGQHQ  GSGPSYTIEP  AYLSRVKEVV240
GWALADGFYV  LLNVHHDSWQ  WINTMPSDRT  NVLARYNATW  TQLASAFKDS  SSKLLLESVN300
EPQFTGSSGD  AQNAQLLGEL  NTSFHRIVRA  SGGGNATRLL  VLPTLHTSAD  QARIDELNTT360
LTALNDRNIA  ATVHYYGYWP  FSVNVAGGTR  FDATAQKDLT  DYLDRAYNSF  VARGIPVILG420
EYGLLGFDRH  TGTIEQGEKL  KFFELFGHYA  KQRKITTMLW  DNGQHLGRTS  FQWSDPELIA480
QIKSSWTTRS  GTASTDQVFS  AKASAITAKT  IALNLNGTTF  SGLRNGSAEL  VRGTDYTVSG540
DQLTLSAALI  TRLSGARAYG  VNATLSARFS  AGVPWRIDLI  TYDTPVLQNA  TGATSAFSIP600
TNFRGDRLAT  MEAKYADGSN  AGPQNWTSFK  EYDHTFAPDY  AAGATLLKPE  LFAEVNAGQR660
VTLTFHYWSG  ATLTYYVTKN  GTSVTGTTS689

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help