CAZyme3D

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Entry ID

Information for CAZyme ID: ATD81520.1

Basic Information

GenBank IDATD81520.1
FamilyGT4
Sequence Length366
UniProt IDA0A807ZKM3(100,100)Download
Average pLDDT?92.83
CAZy50 ID115578
CAZy50 RepNo, AMD89419.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID631220
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio sp. G11
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A807ZKM3.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSTPLRVLFL  MEDLCYGGTQ  RQTLELARRL  DRQKFTPVML  TLTGPTDLDA  AAREAGIELH60
HLGCGRRVSP  VFFLQLATTL  HRLRPGIIVP  CTALPNIWGR  IWGRFLRLWS  GRGAIPLVVG120
TCRGGGGPAR  QHEKWLWRLT  DHMVCNSEAL  QNILLDFGVP  KARLSYIPNG  VDTNFFSPSN180
PAPSQREPII  LCVARLAGDK  DHVTLLRAFE  LVLKTYPAAR  LRLVGDGPEE  AVLKQWAAAH240
AAGSNVDFVP  GGLDMREHYA  AARIFALSSV  REGQPNVILE  AMACGLPVAA  TAVGGIPRLV300
EQEISGLLSP  AADAESMARH  CCRLLDDSAL  CDSMGLAGRQ  RAERDFSFTA  MVDAHEEVFS360
RLNLRA366

Predicted 3D structure by AlphaFold2 with pLDDT = 92.83 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(184-334)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help