CAZyme3D

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Entry ID

Information for CAZyme ID: ATA21910.1

Basic Information

GenBank IDATA21910.1
FamilyGH32
Sequence Length480
UniProt IDA0A250B6Q0(100,100)Download
Average pLDDT?96.38
CAZy50 ID64075
CAZy50 RepNo, WEI57568.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID929813
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusGibbsiella
SpeciesGibbsiella quercinecans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNALLSADH  AVEALHAQRQ  DDYYPRFHLA  AQAGWINDPN  GLICINGVYH  AFYQHHPFDA60
NWGPMHWGHA  TSHDLVHWQH  QPIALAPGDE  FDKDGCFSGC  AVDDRGVLTL  IYTGHVWLGK120
AGDDDQVREV  QCLATSSDGV  HFVKHGPVLL  PPDGIQHFRD  PKVWQQDGQW  WMVVGAKENQ180
LGQVRLYRSH  DLRAWTFERV  LARAQTAAEG  YMWECPDFFP  LGERHLLMFS  PQGLAPHGYH240
NRNRFQSGYL  LGDWQPGQAF  TLDQPFREMD  AGHDFYAPQS  FTAADGRRML  FGWMDMWESP300
MPSKAHGWAG  ALTLPRELSL  DTDGSVLMNP  ARELRALRGE  TQSFGAAQLR  NQRLVLGAAL360
QELALTVDTA  ASDAERYGVT  IGNAARLYID  NQAQRLVLER  FSDEPGLCGC  RSVPLPPAGN420
MQLQVFIDRS  SVEVFVNQGR  ACLTSRIYPA  DGERTISMFA  ESGAAAFGEL  HAWALGSIWE480
480

Predicted 3D structure by AlphaFold2 with pLDDT = 96.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(28-328)

MKNALLSADH  AVEALHAQRQ  DDYYPRFHLA  AQAGWINDPN  GLICINGVYH  AFYQHHPFDA60
NWGPMHWGHA  TSHDLVHWQH  QPIALAPGDE  FDKDGCFSGC  AVDDRGVLTL  IYTGHVWLGK120
AGDDDQVREV  QCLATSSDGV  HFVKHGPVLL  PPDGIQHFRD  PKVWQQDGQW  WMVVGAKENQ180
LGQVRLYRSH  DLRAWTFERV  LARAQTAAEG  YMWECPDFFP  LGERHLLMFS  PQGLAPHGYH240
NRNRFQSGYL  LGDWQPGQAF  TLDQPFREMD  AGHDFYAPQS  FTAADGRRML  FGWMDMWESP300
MPSKAHGWAG  ALTLPRELSL  DTDGSVLMNP  ARELRALRGE  TQSFGAAQLR  NQRLVLGAAL360
QELALTVDTA  ASDAERYGVT  IGNAARLYID  NQAQRLVLER  FSDEPGLCGC  RSVPLPPAGN420
MQLQVFIDRS  SVEVFVNQGR  ACLTSRIYPA  DGERTISMFA  ESGAAAFGEL  HAWALGSIWE480
480

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help