CAZyme3D

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Entry ID

Information for CAZyme ID: ASV37162.1

Basic Information

GenBank IDASV37162.1
FamilyGH50
Sequence Length765
UniProt IDA0A223VPD1(100,100)Download
Average pLDDT?90.87
CAZy50 ID23549
CAZy50 RepNo, SDT65454.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2025658
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NS1(2017)

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRTLPALFA  LLFAAPLMAA  PAGQQTLFNF  VRPADVVKVA  TQDASLPQYN  AEQTPEGEVL60
RRITFNPAAE  PSLVLSPQTG  AWDWSQSGAM  SLRIQSAMDW  ALTLYVKVQS  SDGRTLVSRI120
DLPAGPAQTL  LVPLQANSPL  SQGMKAGPPM  PITLDGQRVL  LASSAGEIDR  SQVVSVTLSM180
IKPNAAQSIL  LERFGVQDSE  PVLKAAYSEL  VDAYGQSTRA  RWPEKVSSDE  QLKAAAAKEQ240
QQLQGWLATR  EKSSLDKYGG  WNKGPAFDAS  GFFRTEKRDG  RWYLVTPEGH  PFYSLGVNTV300
APDNNQTYVS  GREWMFAALP  KAGEPFDKYY  GSGDNRTGNG  AGEGRSFGAG  RWYDFYGANL360
QRTYGGDGFD  QKRWTAHTLD  RLQAWGFNTV  GNWSDDDLTR  ADRVPYTLPL  SIVGDYTSIS420
TGTDWWGGMP  DPFDPRFAMA  TERAVAIAAR  DHRDDPWLIG  FFADNELAWA  GPGDDPKSRY480
ALAYGTLRMT  TDVPAKRAFL  KQLRDKYRNE  EGLSKAWGIE  LKGWELMEDP  GFEPPMPNAE540
HPEIEADFKY  FQKTFADAYF  KTISDSLKWH  APNQLLLGGR  FAVSTPEAVA  SCAQYCDVLS600
FNMYTLKPQD  GYDFAALRAL  DKPVLITEFN  FGSADRGPFW  GGVTQLAREE  DRGAAYGNFL660
KQAMAEPSIV  GVHWFQYLDQ  PATGRLLDGE  NGHFGLVGIT  DVPFQGFVDS  VRKSNLAAVD720
QLGKAAEKAK  AAGAVRESEG  GRAGHEGKGP  GQGAGHAGGH  SGNGH765

Predicted 3D structure by AlphaFold2 with pLDDT = 90.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(75-716)

MIRTLPALFA  LLFAAPLMAA  PAGQQTLFNF  VRPADVVKVA  TQDASLPQYN  AEQTPEGEVL60
RRITFNPAAE  PSLVLSPQTG  AWDWSQSGAM  SLRIQSAMDW  ALTLYVKVQS  SDGRTLVSRI120
DLPAGPAQTL  LVPLQANSPL  SQGMKAGPPM  PITLDGQRVL  LASSAGEIDR  SQVVSVTLSM180
IKPNAAQSIL  LERFGVQDSE  PVLKAAYSEL  VDAYGQSTRA  RWPEKVSSDE  QLKAAAAKEQ240
QQLQGWLATR  EKSSLDKYGG  WNKGPAFDAS  GFFRTEKRDG  RWYLVTPEGH  PFYSLGVNTV300
APDNNQTYVS  GREWMFAALP  KAGEPFDKYY  GSGDNRTGNG  AGEGRSFGAG  RWYDFYGANL360
QRTYGGDGFD  QKRWTAHTLD  RLQAWGFNTV  GNWSDDDLTR  ADRVPYTLPL  SIVGDYTSIS420
TGTDWWGGMP  DPFDPRFAMA  TERAVAIAAR  DHRDDPWLIG  FFADNELAWA  GPGDDPKSRY480
ALAYGTLRMT  TDVPAKRAFL  KQLRDKYRNE  EGLSKAWGIE  LKGWELMEDP  GFEPPMPNAE540
HPEIEADFKY  FQKTFADAYF  KTISDSLKWH  APNQLLLGGR  FAVSTPEAVA  SCAQYCDVLS600
FNMYTLKPQD  GYDFAALRAL  DKPVLITEFN  FGSADRGPFW  GGVTQLAREE  DRGAAYGNFL660
KQAMAEPSIV  GVHWFQYLDQ  PATGRLLDGE  NGHFGLVGIT  DVPFQGFVDS  VRKSNLAAVD720
QLGKAAEKAK  AAGAVRESEG  GRAGHEGKGP  GQGAGHAGGH  SGNGH765

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help