CAZyme3D

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Entry ID

Information for CAZyme ID: AST52610.1

Basic Information

GenBank IDAST52610.1
FamilyGT4
Sequence Length422
UniProt IDA0A223HJJ1(100,100)Download
Average pLDDT?94.67
CAZy50 ID82691
CAZy50 RepNo, BBL04037.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2025876
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides sp. CT06

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKALMFGWEF  PPHILGGLGT  ASFGLTRGMA  MQPDMDITFC  IPKPWGDEDQ  SFLKIVGVNQ60
VPIVWKDVDR  EYVQQRVSKA  GMNADQYYKY  RDHIYADFSY  RHVTDLGCLE  FSGRYPDNLL120
EEINNYSIVA  GVIARTEEYD  IIHAHDWLTY  PAGIHAKNVS  GKPLVIHVHA  TDYDRSRGNV180
NPDVYAIEKN  GMDNADHIIT  VSNLTRQTVI  EKYHQDPAKV  TTVHNAVEPL  SPEILAIPDK240
KGVKDKVITF  LGRITMQKGP  EYFVEAAAKV  LAKAPYARFV  MAGSGDMMDQ  MIRLAAARNI300
SDRFHFTGFM  KGKQVYEVLK  ASDVYVMPSV  SEPFGISPLE  AMQCGVPSII  SKQSGCAEIL360
DYAIKVDYWD  IEALADAMYS  IITYPAMHEF  LKVEGKKEVD  NIKWEYAGQK  VRRIYDNVIG420
NK422

Predicted 3D structure by AlphaFold2 with pLDDT = 94.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(244-386)

MKALMFGWEF  PPHILGGLGT  ASFGLTRGMA  MQPDMDITFC  IPKPWGDEDQ  SFLKIVGVNQ60
VPIVWKDVDR  EYVQQRVSKA  GMNADQYYKY  RDHIYADFSY  RHVTDLGCLE  FSGRYPDNLL120
EEINNYSIVA  GVIARTEEYD  IIHAHDWLTY  PAGIHAKNVS  GKPLVIHVHA  TDYDRSRGNV180
NPDVYAIEKN  GMDNADHIIT  VSNLTRQTVI  EKYHQDPAKV  TTVHNAVEPL  SPEILAIPDK240
KGVKDKVITF  LGRITMQKGP  EYFVEAAAKV  LAKAPYARFV  MAGSGDMMDQ  MIRLAAARNI300
SDRFHFTGFM  KGKQVYEVLK  ASDVYVMPSV  SEPFGISPLE  AMQCGVPSII  SKQSGCAEIL360
DYAIKVDYWD  IEALADAMYS  IITYPAMHEF  LKVEGKKEVD  NIKWEYAGQK  VRRIYDNVIG420
NK422

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help