CAZyme3D

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Entry ID

Information for CAZyme ID: ASR49482.1

Basic Information

GenBank IDASR49482.1
FamilyCBM3, CBM35, GH26
Sequence Length859
UniProt IDA0A222WU32(100,100)Download
Average pLDDT?88.48
CAZy50 ID16865
CAZy50 RepNo, QKS45740.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID172713
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus kribbensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNLLKKASA  FMLAFTLLLG  LITTAPVHAD  DTALFTIEGE  DAQLTSDLQV  ATEIYGQPKP60
GFSGSGFVWM  QNSGTITFTV  TVPETGMYAI  STRYMQELSP  DGRLQYLTVN  GATKGSYMLP120
YTTTWSNFDF  GFHKLKQGSN  TIQLKSGWGF  AYFDTFTVDY  ADLDPLNVQP  VLTDSKATPE180
TQRLMNYLTE  VYGNHMISGQ  QEIYGGGNDG  NTELEFDWIH  NLTGKYPAIR  GFDLMNYNPL240
YGWEDGTTDR  MINWVNNRGG  IATASWHINV  PRNFTAYQLG  EPVDWKNATY  KPTETNFNTA300
NAVVPGTKEY  QYVKMTIKDL  AKQLQILQDN  NVPVIFRPYH  EAEGNGGLKG  EGAWFWWASA360
GADVYKQLWD  QIYTELTETY  GLHNLIWTYN  SYVYSTSPAW  YPGDDKVDIV  GYDKYNTVYN420
RYDGLSGVPN  EDAITSIFYQ  LVDLTGGKKM  VAMTENDTVP  SVQNLTEEKS  GWLYFLPWYG480
EHLMSSAFNY  PATLKTIYQS  DYVITLDELP  DLKADDKTPR  ASITPTSVEF  DTYAPNQSDK540
AITVNFNDNT  LTALRAGDNA  LTVTQDYTLN  GNTLLLKKEF  LAGLPVGEHS  IVFDFNQGKD600
SVLKVKIVDS  TPSAAISPVN  ATFDKAANPG  QDLSASLTLN  GHQLASITNG  NYTLASGQDY660
TESGADVVLS  KSYLATLPLG  QNAITFHFNG  GNNAVLTVNV  VDSSVPVPAG  DLTIQAFNGN720
TSASTNGISP  RFKLVNNGDS  AIQLSDVKLR  YYYTIDGEKA  QSFWCDWSSI  GSANVTSKFV780
KLATPVAGAD  YYLEIGFTSS  AGTLNPGQSA  EVQARFSKTD  WSNYNQADDY  SFKASSNQFA840
DNEQVTGYMN  GQLVWGIEL859

Predicted 3D structure by AlphaFold2 with pLDDT = 88.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(40-158)+GH26(174-508)+CBM46(538-601)+CBM46(623-694)+CBM3(716-796)

MKNLLKKASA  FMLAFTLLLG  LITTAPVHAD  DTALFTIEGE  DAQLTSDLQV  ATEIYGQPKP60
GFSGSGFVWM  QNSGTITFTV  TVPETGMYAI  STRYMQELSP  DGRLQYLTVN  GATKGSYMLP120
YTTTWSNFDF  GFHKLKQGSN  TIQLKSGWGF  AYFDTFTVDY  ADLDPLNVQP  VLTDSKATPE180
TQRLMNYLTE  VYGNHMISGQ  QEIYGGGNDG  NTELEFDWIH  NLTGKYPAIR  GFDLMNYNPL240
YGWEDGTTDR  MINWVNNRGG  IATASWHINV  PRNFTAYQLG  EPVDWKNATY  KPTETNFNTA300
NAVVPGTKEY  QYVKMTIKDL  AKQLQILQDN  NVPVIFRPYH  EAEGNGGLKG  EGAWFWWASA360
GADVYKQLWD  QIYTELTETY  GLHNLIWTYN  SYVYSTSPAW  YPGDDKVDIV  GYDKYNTVYN420
RYDGLSGVPN  EDAITSIFYQ  LVDLTGGKKM  VAMTENDTVP  SVQNLTEEKS  GWLYFLPWYG480
EHLMSSAFNY  PATLKTIYQS  DYVITLDELP  DLKADDKTPR  ASITPTSVEF  DTYAPNQSDK540
AITVNFNDNT  LTALRAGDNA  LTVTQDYTLN  GNTLLLKKEF  LAGLPVGEHS  IVFDFNQGKD600
SVLKVKIVDS  TPSAAISPVN  ATFDKAANPG  QDLSASLTLN  GHQLASITNG  NYTLASGQDY660
TESGADVVLS  KSYLATLPLG  QNAITFHFNG  GNNAVLTVNV  VDSSVPVPAG  DLTIQAFNGN720
TSASTNGISP  RFKLVNNGDS  AIQLSDVKLR  YYYTIDGEKA  QSFWCDWSSI  GSANVTSKFV780
KLATPVAGAD  YYLEIGFTSS  AGTLNPGQSA  EVQARFSKTD  WSNYNQADDY  SFKASSNQFA840
DNEQVTGYMN  GQLVWGIEL859

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help