CAZyme3D

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Entry ID

Information for CAZyme ID: ASL86743.1

Basic Information

GenBank IDASL86743.1
FamilyGH3
Sequence Length765
UniProt IDA0A221DMC3(100,100)Download
Average pLDDT?95.38
CAZy50 ID3882
CAZy50 RepNo, SQK97389.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID615
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia marcescens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKWLCVVSML  SGLALSPAFA  QETPITQGIH  AQQRDAFVSH  LMKQMTLEEK  IGQLRLISVG60
PDNPKEAIRE  GIRKGQIGAI  FNTVTRPDIR  VMQDQAMQLS  RLKIPLFFAY  DVVHGQRTVF120
PISLGLAASF  DLEAIALSAR  VAAQEASDDG  LNMTFAPMVD  ITRDPRWGRV  SEGFGEDTWL180
VSKIAKVMVD  GYQNGDPAKP  GSVMASVKHF  ALYGAVEGGR  DYNTVDMSPL  RMYQDYLPPY240
KAAVDAGSGG  VMVSLNSVNG  VPATANPWLL  KDLLRDQWGF  KGITISDHGA  IKELIKHGVA300
ADARDAVRLA  ITSGVDMSMS  DEFYDKYLPG  LVKDGLVPES  DIDRACRDVL  NTKYDMGLFT360
DPYVHLGPAG  SDPQDTNAES  RLHRAEARVV  ARKTMVLLKN  DKQTLPLSKQ  ATIALVGPMA420
DSQRDVMGSW  SAAGVVKQSV  TLREGLERAV  GDKARILYAK  GANVTQDKGI  IDYLNEYEPA480
VAFDTRSPQQ  MIDEAVQAAN  KADVVVAVVG  ESQGMAHEAS  SRADITIPQS  QRDLIAALKA540
TGKPLVLVLM  NGRPLALSWE  SEQADAMLET  WYSGTEGGNA  VADVLFGDYN  PSGKLPMTFP600
RSVGQIPMYY  NHLNTGRPFG  KENPGKYTSR  YFDSPNGPLY  PFGYGLSYTT  FSLSDLKLSS660
PTMARNGKLT  ASVTLKNTGK  YDGATVVQLY  LQDVTASVSR  PVKELRNFKK  VTLKAGQSQQ720
VELPISEDDL  KFYNASLKWG  AEPGKFNVFV  GLDSDNVQAQ  SFTLK765

Predicted 3D structure by AlphaFold2 with pLDDT = 95.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(98-319)

MKWLCVVSML  SGLALSPAFA  QETPITQGIH  AQQRDAFVSH  LMKQMTLEEK  IGQLRLISVG60
PDNPKEAIRE  GIRKGQIGAI  FNTVTRPDIR  VMQDQAMQLS  RLKIPLFFAY  DVVHGQRTVF120
PISLGLAASF  DLEAIALSAR  VAAQEASDDG  LNMTFAPMVD  ITRDPRWGRV  SEGFGEDTWL180
VSKIAKVMVD  GYQNGDPAKP  GSVMASVKHF  ALYGAVEGGR  DYNTVDMSPL  RMYQDYLPPY240
KAAVDAGSGG  VMVSLNSVNG  VPATANPWLL  KDLLRDQWGF  KGITISDHGA  IKELIKHGVA300
ADARDAVRLA  ITSGVDMSMS  DEFYDKYLPG  LVKDGLVPES  DIDRACRDVL  NTKYDMGLFT360
DPYVHLGPAG  SDPQDTNAES  RLHRAEARVV  ARKTMVLLKN  DKQTLPLSKQ  ATIALVGPMA420
DSQRDVMGSW  SAAGVVKQSV  TLREGLERAV  GDKARILYAK  GANVTQDKGI  IDYLNEYEPA480
VAFDTRSPQQ  MIDEAVQAAN  KADVVVAVVG  ESQGMAHEAS  SRADITIPQS  QRDLIAALKA540
TGKPLVLVLM  NGRPLALSWE  SEQADAMLET  WYSGTEGGNA  VADVLFGDYN  PSGKLPMTFP600
RSVGQIPMYY  NHLNTGRPFG  KENPGKYTSR  YFDSPNGPLY  PFGYGLSYTT  FSLSDLKLSS660
PTMARNGKLT  ASVTLKNTGK  YDGATVVQLY  LQDVTASVSR  PVKELRNFKK  VTLKAGQSQQ720
VELPISEDDL  KFYNASLKWG  AEPGKFNVFV  GLDSDNVQAQ  SFTLK765

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help