CAZyme3D

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Entry ID

Information for CAZyme ID: ASE40043.1

Basic Information

GenBank IDASE40043.1
FamilyGT26
Sequence Length286
UniProt IDA0A1Z3U9S4(100,100)Download
Average pLDDT?83.30
CAZy50 ID135122
CAZy50 RepNo, ATQ41123.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID41276
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusBrevundimonas
SpeciesBrevundimonas vesicularis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MADPSLSPSA  PERFVPERRA  RPRAPFRQNR  RAHERVTILG  QSMDLVKPEE  VLHHIQQAVR60
QGAKSLIANH  NLHSLYLMRK  RPELGAFYDR  ADLIEVDSTP  LLAFSRALGL  HSRGFHRCTY120
LDWRDHFWSV  ANRQGWRVLS  VGGAPGVGDE  AARRLKLRYP  DADIAIHHGF  FNARPGSSEN180
AAVLDRITAF  QPNILFVGMG  MPRQELWIAE  NFERLPDCVI  LSVGAAFDYE  AGVQSAAPRW240
MGRAGIEWAY  RLLHDPKRLF  VRYCVEPWTL  LPLAVRDIRQ  ARGRSR286

Predicted 3D structure by AlphaFold2 with pLDDT = 83.30 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT26(88-262)

MADPSLSPSA  PERFVPERRA  RPRAPFRQNR  RAHERVTILG  QSMDLVKPEE  VLHHIQQAVR60
QGAKSLIANH  NLHSLYLMRK  RPELGAFYDR  ADLIEVDSTP  LLAFSRALGL  HSRGFHRCTY120
LDWRDHFWSV  ANRQGWRVLS  VGGAPGVGDE  AARRLKLRYP  DADIAIHHGF  FNARPGSSEN180
AAVLDRITAF  QPNILFVGMG  MPRQELWIAE  NFERLPDCVI  LSVGAAFDYE  AGVQSAAPRW240
MGRAGIEWAY  RLLHDPKRLF  VRYCVEPWTL  LPLAVRDIRQ  ARGRSR286

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help