CAZyme3D

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Entry ID

Information for CAZyme ID: ASD65242.1

Basic Information

GenBank IDASD65242.1
FamilyGH171
Sequence Length397
UniProt IDA0A1Z3NCQ0(100,100)Download
Average pLDDT?95.19
CAZy50 ID87355
CAZy50 RepNo, QFT77865.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID959
KingdomBacteria
PhylumBdellovibrionota
ClassBdellovibrionia
OrderBdellovibrionales
FamilyPseudobdellovibrionaceae
GenusBdellovibrio
SpeciesBdellovibrio bacteriovorus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLGLEVLLS  NPKMLKSLKG  KRVGLVCHPA  SVDENLQHSM  DLLSKKIKLS  CAFGPQHGVR60
GDKQDNMIES  PDFVDPVHKI  PVFSLYGEVR  RPTAEMMSHF  DVVLFDLQDL  GCRIYTFITT120
LLYIMEESAK  LGKTVIVLDR  PNPAGRPVEG  FKMLPGWESF  VGAAPIPMRH  GLTVGELALY180
FADYYKMDLD  LQIVKMKGYS  PDKGPGFGWD  LKRPWVNPSP  NAASLNMARA  YSGTVLIEGT240
TLSEARGTTR  ALEIIGASDI  DYAEVLVRMK  KKAPQWFKGV  TLRECFFEPT  FHKHVGKLCH300
GFQFHTDGIS  YKHDQFKPFR  LTALMLKVIR  EMHPKYPIYR  DFAYEYVKDR  LAFDVINGGP360
ALKNWIENPK  ATPKDLDAAL  AKDEKSWIKE  RKKYLLY397

Predicted 3D structure by AlphaFold2 with pLDDT = 95.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(23-397)

MKLGLEVLLS  NPKMLKSLKG  KRVGLVCHPA  SVDENLQHSM  DLLSKKIKLS  CAFGPQHGVR60
GDKQDNMIES  PDFVDPVHKI  PVFSLYGEVR  RPTAEMMSHF  DVVLFDLQDL  GCRIYTFITT120
LLYIMEESAK  LGKTVIVLDR  PNPAGRPVEG  FKMLPGWESF  VGAAPIPMRH  GLTVGELALY180
FADYYKMDLD  LQIVKMKGYS  PDKGPGFGWD  LKRPWVNPSP  NAASLNMARA  YSGTVLIEGT240
TLSEARGTTR  ALEIIGASDI  DYAEVLVRMK  KKAPQWFKGV  TLRECFFEPT  FHKHVGKLCH300
GFQFHTDGIS  YKHDQFKPFR  LTALMLKVIR  EMHPKYPIYR  DFAYEYVKDR  LAFDVINGGP360
ALKNWIENPK  ATPKDLDAAL  AKDEKSWIKE  RKKYLLY397

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help