CAZyme3D

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Entry ID

Information for CAZyme ID: ART66715.1

Basic Information

GenBank IDART66715.1
FamilyGT20
Sequence Length289
UniProt IDA0A1Y0BVP7(100,100)Download
Average pLDDT?95.41
CAZy50 ID65123
CAZy50 RepNo, WGJ15216.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID29449
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium etli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

NITYALTDLT  DTDVEEYYRG  FANRVLWPIC  HYRLDLAEYG  RKEMAGYFRV  NRFFAHRLAP60
MIEPDDIIWV  HDYHLIPLAA  ELRQMGLKNR  IGFFLHIPWP  PADILVTMPV  HEEIMRGLSH120
YDLVGFQTDY  DLQNFAGYLR  REGIGDDLGN  GSFDSHGRIF  KAGAYPIGIE  TAGFADFAES180
AADNVMVQKT  RRSIEGRDMI  IGVDRLDYSK  GIIQRLEAFE  RFLTGNPAYQ  NKVTYLQITP240
KSRSEVPEYE  HMQKMVAEQA  GRVNGAIGTV  DWVPIRYVNR  SINRTVLAG289

Predicted 3D structure by AlphaFold2 with pLDDT = 95.41 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT20(2-287)

NITYALTDLT  DTDVEEYYRG  FANRVLWPIC  HYRLDLAEYG  RKEMAGYFRV  NRFFAHRLAP60
MIEPDDIIWV  HDYHLIPLAA  ELRQMGLKNR  IGFFLHIPWP  PADILVTMPV  HEEIMRGLSH120
YDLVGFQTDY  DLQNFAGYLR  REGIGDDLGN  GSFDSHGRIF  KAGAYPIGIE  TAGFADFAES180
AADNVMVQKT  RRSIEGRDMI  IGVDRLDYSK  GIIQRLEAFE  RFLTGNPAYQ  NKVTYLQITP240
KSRSEVPEYE  HMQKMVAEQA  GRVNGAIGTV  DWVPIRYVNR  SINRTVLAG289

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help