CAZyme3D

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Entry ID

Information for CAZyme ID: ARS06832.1

Basic Information

GenBank IDARS06832.1
FamilyCBM50, GH23
Sequence Length452
UniProt IDA0A0H7WTA3(100,100)Download
Average pLDDT?78.02
CAZy50 ID68708
CAZy50 RepNo, QKJ85951.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID624
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKAKAILLAS  VLLVGCQSTG  NVQQHAQSLS  AAGQGEAAKF  TSQARWMDDG  TSIAPDGDLW60
AFIGDELKMG  IPENDRIREQ  KQKYLRNKSY  LHDVTLRAEP  YMYWIAGQVK  KRNMPMELVL120
LPIVESAFDP  HATSGANAAG  IWQIIPSTGR  NYGLKQTRNY  DARRDVVAST  TAALNMMQRL180
NKMFDGDWLL  TVAAYNSGEG  RVMKAIKTNK  ARGKSTDFWS  LPLPQETKQY  VPKMLALSDI240
LKNSKRYGVR  LPTTDESRAL  ARVHLSSPVE  MAKVADMAGI  SVSKLKTFNA  GVKGSTLGAS300
GPQYVMVPKK  HADQLRESLA  SGEIAAVQST  LVADNTPLNS  RVYTVRSGDT  LSSIASRLGV360
STKDLQQWNK  LRGSKLKPGQ  SLTIGAGSSA  QRLANNSDSI  TYRVRKGDSL  SSIAKRHGVN420
IKDVMRWNSD  TANLQPGDKL  TLFVKNNNMP  DS452

Predicted 3D structure by AlphaFold2 with pLDDT = 78.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(101-244)+CBM50(343-384)+CBM50(402-442)

MKAKAILLAS  VLLVGCQSTG  NVQQHAQSLS  AAGQGEAAKF  TSQARWMDDG  TSIAPDGDLW60
AFIGDELKMG  IPENDRIREQ  KQKYLRNKSY  LHDVTLRAEP  YMYWIAGQVK  KRNMPMELVL120
LPIVESAFDP  HATSGANAAG  IWQIIPSTGR  NYGLKQTRNY  DARRDVVAST  TAALNMMQRL180
NKMFDGDWLL  TVAAYNSGEG  RVMKAIKTNK  ARGKSTDFWS  LPLPQETKQY  VPKMLALSDI240
LKNSKRYGVR  LPTTDESRAL  ARVHLSSPVE  MAKVADMAGI  SVSKLKTFNA  GVKGSTLGAS300
GPQYVMVPKK  HADQLRESLA  SGEIAAVQST  LVADNTPLNS  RVYTVRSGDT  LSSIASRLGV360
STKDLQQWNK  LRGSKLKPGQ  SLTIGAGSSA  QRLANNSDSI  TYRVRKGDSL  SSIAKRHGVN420
IKDVMRWNSD  TANLQPGDKL  TLFVKNNNMP  DS452

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help