Information for CAZyme ID: ARP82198.1
Basic Information
| GenBank ID | ARP82198.1 |
| Family | GH13_26 |
| Sequence Length | 899 |
| UniProt ID | A0A1W6YMD6(100,100) |
| Average pLDDT? | 94.24 |
| CAZy50 ID | 7203 |
| CAZy50 Rep | No, QKH41204.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1416806 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Alcaligenaceae |
| Genus | Bordetella |
| Species | Bordetella genomosp. 8 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTAPRATVRL QLHQGYTLAD AREHVPYFAR LGVSHLYLSP ITRARPGSQH GYDVVDHAQV | 60 |
| NPELGGEPAL RALAATAREA GLGLIVDIVP NHMATSTDNP WWRSVLERGR GSPHAEWFDI | 120 |
| TWDSTDKDMH DKVLAPFLGK PYGEALAAGD IGLRYDARTK RCYVDVHGSP YPLDPASLDD | 180 |
| GGPRDAGALA DFDPATDAGR ERLHALLERQ HYRLAWWRAA PEEINWRRFF EITDLIGVRV | 240 |
| DQPVVFDAVH AMILGFYEEG LIDGVRVDHV DGLSDPIAYC ERLRAALDER AQRRPAQLRD | 300 |
| QDPYLVIEKI LADDETLDDR WKVNGTTGYD FMSQVGAVLH DPSGEQTLTE LWESVSGDPR | 360 |
| PFTAIANEAR DLMMLRHFPA ERLAAARALH RVARLDLRTR DWGESAIQRV LWELLSVFPV | 420 |
| YRIYADERGW HHMDRVRFEH AATQAHARIR LDRDGDDGPL LELMSGWLGG EAPENFPPEQ | 480 |
| CLARREAVRR FQQLTPPLTA KSLEDTAFYR YGRLLSRNEV GADPGLFCMA PDVFHRRCSS | 540 |
| RGRHFPHAMV ATATHDHKRG EDTRSRLAAL SEVSAQWADT VLDWMNRHVP ATYSGAGTLS | 600 |
| PHPGDVYMLL QTLVAAWPLA LAPDDEAGLQ AFGDRVSAWQ QKALREAKLR TSWVVPDATY | 660 |
| EAACEDVLRK LLQPATEPDS PAREIAAFAN RIAPAGAVNS LSQTLLRMTV PGVPDLYQGT | 720 |
| EFWDFSLVDP DNRAPVDYAA RMAALEAGDA DDPDALLANW RDGRLKQAIV RGALQARRDY | 780 |
| ADIFADGNYV PLPILGSRGA NILAFLRCLE DRCVFVLAPR LCSLGLRGEA GDDPSGPSTA | 840 |
| LPRIDGDFWD TTAVVLPHRY AGATLRDALS GRERRVGADS ILPLAEALAD FPVALLVAD | 899 |
Predicted 3D structure by AlphaFold2 with pLDDT = 94.24 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH13_26(25-337)
| MTAPRATVRL QLHQGYTLAD AREHVPYFAR LGVSHLYLSP ITRARPGSQH GYDVVDHAQV | 60 |
| NPELGGEPAL RALAATAREA GLGLIVDIVP NHMATSTDNP WWRSVLERGR GSPHAEWFDI | 120 |
| TWDSTDKDMH DKVLAPFLGK PYGEALAAGD IGLRYDARTK RCYVDVHGSP YPLDPASLDD | 180 |
| GGPRDAGALA DFDPATDAGR ERLHALLERQ HYRLAWWRAA PEEINWRRFF EITDLIGVRV | 240 |
| DQPVVFDAVH AMILGFYEEG LIDGVRVDHV DGLSDPIAYC ERLRAALDER AQRRPAQLRD | 300 |
| QDPYLVIEKI LADDETLDDR WKVNGTTGYD FMSQVGAVLH DPSGEQTLTE LWESVSGDPR | 360 |
| PFTAIANEAR DLMMLRHFPA ERLAAARALH RVARLDLRTR DWGESAIQRV LWELLSVFPV | 420 |
| YRIYADERGW HHMDRVRFEH AATQAHARIR LDRDGDDGPL LELMSGWLGG EAPENFPPEQ | 480 |
| CLARREAVRR FQQLTPPLTA KSLEDTAFYR YGRLLSRNEV GADPGLFCMA PDVFHRRCSS | 540 |
| RGRHFPHAMV ATATHDHKRG EDTRSRLAAL SEVSAQWADT VLDWMNRHVP ATYSGAGTLS | 600 |
| PHPGDVYMLL QTLVAAWPLA LAPDDEAGLQ AFGDRVSAWQ QKALREAKLR TSWVVPDATY | 660 |
| EAACEDVLRK LLQPATEPDS PAREIAAFAN RIAPAGAVNS LSQTLLRMTV PGVPDLYQGT | 720 |
| EFWDFSLVDP DNRAPVDYAA RMAALEAGDA DDPDALLANW RDGRLKQAIV RGALQARRDY | 780 |
| ADIFADGNYV PLPILGSRGA NILAFLRCLE DRCVFVLAPR LCSLGLRGEA GDDPSGPSTA | 840 |
| LPRIDGDFWD TTAVVLPHRY AGATLRDALS GRERRVGADS ILPLAEALAD FPVALLVAD | 899 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.