CAZyme3D

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Entry ID

Information for CAZyme ID: ARP42915.1

Basic Information

GenBank IDARP42915.1
FamilyGH51
Sequence Length502
UniProt IDA0A1W6VSH5(100,100)Download
Average pLDDT?98.21
CAZy50 ID43511
CAZy50 RepNo, AAA61708.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID33940
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusGeobacillus
SpeciesGeobacillus thermodenitrificans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSVKRAQMII  EKDFKIAKID  KRIYGSFIEH  LGRAVYGGIY  EPGHPQADEN  GFRQDVIEMV60
KELQVPIIRY  PGGNFVSGYN  WEDGVGPKEK  RPRRLDLAWK  SVETNEIGLN  EFVDWAKMVG120
AEVNMAVNLG  TRGIDAARNL  VEYCNHPSGS  YYSDLRISHG  YKEPHKIKTW  CLGNEMDGPW180
QIGHKTAVEY  GRIACEAAKV  MKWVDPTIEL  VACGSSGRNM  PTFAEWEAIV  LDHTYEHVDY240
ISLHQYFGNR  DNDTANYLAM  SLEMDDFIRS  VVAIADYVKA  KKRSKKTIHL  SFDEWNVWYH300
SNEADKQIEP  WTVAPPLLED  IYNFEDALLV  GCMLITLMKH  ADRVKIACLA  QLVNVIAPIM360
TEKNGPAWKQ  TIYYPFMHAS  VYGRGVALHP  VISSPKYDSK  DFTDVPYLES  IAVYNEEKEE420
VTIFAVNRDM  EDSLLLECDV  RNFEDYRVIE  HIVLEHENVK  QTNSAQSSPV  VPHRNGNAQM480
SAGKVSATLP  KLSWNVIRLG  KR502

Predicted 3D structure by AlphaFold2 with pLDDT = 98.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH51(3-500)

MSVKRAQMII  EKDFKIAKID  KRIYGSFIEH  LGRAVYGGIY  EPGHPQADEN  GFRQDVIEMV60
KELQVPIIRY  PGGNFVSGYN  WEDGVGPKEK  RPRRLDLAWK  SVETNEIGLN  EFVDWAKMVG120
AEVNMAVNLG  TRGIDAARNL  VEYCNHPSGS  YYSDLRISHG  YKEPHKIKTW  CLGNEMDGPW180
QIGHKTAVEY  GRIACEAAKV  MKWVDPTIEL  VACGSSGRNM  PTFAEWEAIV  LDHTYEHVDY240
ISLHQYFGNR  DNDTANYLAM  SLEMDDFIRS  VVAIADYVKA  KKRSKKTIHL  SFDEWNVWYH300
SNEADKQIEP  WTVAPPLLED  IYNFEDALLV  GCMLITLMKH  ADRVKIACLA  QLVNVIAPIM360
TEKNGPAWKQ  TIYYPFMHAS  VYGRGVALHP  VISSPKYDSK  DFTDVPYLES  IAVYNEEKEE420
VTIFAVNRDM  EDSLLLECDV  RNFEDYRVIE  HIVLEHENVK  QTNSAQSSPV  VPHRNGNAQM480
SAGKVSATLP  KLSWNVIRLG  KR502

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help