CAZyme3D

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Entry ID

Information for CAZyme ID: ARN77255.1

Basic Information

GenBank IDARN77255.1
FamilyGH53
Sequence Length399
UniProt IDA0A1W6MI25(100,100)Download
Average pLDDT?89.01
CAZy50 ID98841
CAZy50 RepNo, APU68350.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID331648
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusNonlabens
SpeciesNonlabens spongiae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDIIQISLSR  KRKYTTMLKF  IFAMTLLAAS  SCSDENTTVS  ENDDDGNVGS  VPEPVSFYYG60
ADLSYVNEME  DCGAIYSNRD  GIVQDPYSIF  AEEGANIVRL  RLWHNPTWTN  YSNLQDVKRS120
IQRAKDEGMQ  VLLDFHYSDT  WTDPAKQQIP  AAWIASIDDT  PALGNLLYDY  TYDTLTELAS180
ENLLPNIVQV  GNEINPMILQ  DGDLVWPIDW  TRNAALINKG  ILAVRNVAQE  QNKEIEVMLH240
IAQPENGLWW  FDQATDAGVT  DYDWIGLSYY  PIWSEYDLNQ  VQAPLTSLIN  DYNKKLMIVE300
TAYPFTMNNA  DAANNILGQD  ALTGGFPASP  QGQLDYLNRL  QEVIENAGGQ  GLIYWEPAWV360
STGCSTLWAT  GSHWDNATLF  DQNNRATIGM  TFYNATLND399

Predicted 3D structure by AlphaFold2 with pLDDT = 89.01 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH53(59-388)

MDIIQISLSR  KRKYTTMLKF  IFAMTLLAAS  SCSDENTTVS  ENDDDGNVGS  VPEPVSFYYG60
ADLSYVNEME  DCGAIYSNRD  GIVQDPYSIF  AEEGANIVRL  RLWHNPTWTN  YSNLQDVKRS120
IQRAKDEGMQ  VLLDFHYSDT  WTDPAKQQIP  AAWIASIDDT  PALGNLLYDY  TYDTLTELAS180
ENLLPNIVQV  GNEINPMILQ  DGDLVWPIDW  TRNAALINKG  ILAVRNVAQE  QNKEIEVMLH240
IAQPENGLWW  FDQATDAGVT  DYDWIGLSYY  PIWSEYDLNQ  VQAPLTSLIN  DYNKKLMIVE300
TAYPFTMNNA  DAANNILGQD  ALTGGFPASP  QGQLDYLNRL  QEVIENAGGQ  GLIYWEPAWV360
STGCSTLWAT  GSHWDNATLF  DQNNRATIGM  TFYNATLND399

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help